Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1020
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 29 4.2
10_08_0898 + 21424379-21424792,21424974-21425723 29 5.6
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 29 5.6
09_02_0190 + 5556223-5556705 29 5.6
08_02_1354 - 26337628-26338540,26339638-26339981 29 5.6
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 29 5.6
05_06_0151 - 25999366-26000044,26004820-26005637 29 5.6
02_02_0537 + 11308195-11309667 29 5.6
01_05_0645 - 23899579-23904483 29 5.6
01_01_0060 + 477667-477816,479312-479722 29 5.6
06_02_0001 - 10431189-10432634 28 9.8
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 28 9.8
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 428 SDGFDEDGDRCLWCLKAP 375
SDGFDE D C CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 388 HHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPD 492
HH H PS AT +TS H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 328 STSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 973 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1028
>09_02_0190 + 5556223-5556705
Length = 160
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 223 LACLKVIALLTAKTKQKFSTFIHQVNEI 140
LAC KV A++T K+ ++ H VN++
Sbjct: 116 LACKKVAAMMTGKSPEQMREIFHIVNDL 143
>08_02_1354 - 26337628-26338540,26339638-26339981
Length = 418
Score = 28.7 bits (61), Expect = 5.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = +1
Query: 364 WSINGAFRHHKHRSPSSS 417
W ++GA HH HR+P+++
Sbjct: 48 WRVDGASHHHHHRAPTAA 65
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/53 (39%), Positives = 25/53 (47%)
Frame = +1
Query: 367 SINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLSGSRFRSGG 525
S NG + R P SS +L +G LS S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGG 249
>05_06_0151 - 25999366-26000044,26004820-26005637
Length = 498
Score = 28.7 bits (61), Expect = 5.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 422 GFDEDGDRCLWCLKAPLMDQDDPQ 351
G ++ G R LW ++AP++ +DP+
Sbjct: 315 GLEKSGHRFLWVVRAPIVVNNDPE 338
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 328 STSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 186
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 328 STSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
ST P + +IN + H PSSS T T + H H P SF P +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYI 1305
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 385 RHHKHRS-PSSSNPSLATKGSTSELSHRHSPLSFSPDL 495
RHH H S SSS+P +TK + ++L H ++ L
Sbjct: 32 RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69
>06_02_0001 - 10431189-10432634
Length = 481
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 422 GFDEDGDRCLWCLKAPLMDQDD 357
G + G R LW LK ++D+DD
Sbjct: 309 GLEASGSRFLWILKTTVVDRDD 330
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 403 SPSSSNPSLATKGSTSELSHRHSPLSFSPDLLSGSRFRSG 522
+P+ PS + ++ +H H F P L+ FR+G
Sbjct: 95 TPTKGKPSSGKTTTCTKYAHYHQLKGFKPSLVCADTFRAG 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,272
Number of Sequences: 37544
Number of extensions: 437907
Number of successful extensions: 1110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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