Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1020
(791 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 32 2.1
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 32 2.1
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 32 2.1
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 32 2.1
X73637-1|CAA52017.1| 101|Homo sapiens Leydig insulin-like hormo... 32 2.7
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 31 6.3
D83783-1|BAA12112.1| 2124|Homo sapiens KIAA0192 protein. 30 8.3
AF117755-1|AAD22033.1| 2212|Homo sapiens thyroid hormone recepto... 30 8.3
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 319 GKPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ S S S +
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK-SEGSSSSKLSSSMY 1117
Query: 499 SGSRFRSGG*ILPSTALARASVSNSPV 579
S S+ SG +++ + +SP+
Sbjct: 1118 S-SQGSSGSSQSKNSSQSGGKPGSSPI 1143
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 319 GKPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ S S S +
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK-SEGSSSSKLSSSMY 1132
Query: 499 SGSRFRSGG*ILPSTALARASVSNSPV 579
S S+ SG +++ + +SP+
Sbjct: 1133 S-SQGSSGSSQSKNSSQSGGKPGSSPI 1158
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 319 GKPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ S S S +
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK-SEGSSSSKLSSSMY 1117
Query: 499 SGSRFRSGG*ILPSTALARASVSNSPV 579
S S+ SG +++ + +SP+
Sbjct: 1118 S-SQGSSGSSQSKNSSQSGGKPGSSPI 1143
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/87 (31%), Positives = 43/87 (49%)
Frame = +1
Query: 319 GKPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLL 498
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+ S S S +
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK-SEGSSSSKLSSSMY 1132
Query: 499 SGSRFRSGG*ILPSTALARASVSNSPV 579
S S+ SG +++ + +SP+
Sbjct: 1133 S-SQGSSGSSQSKNSSQSGGKPGSSPI 1158
>X73637-1|CAA52017.1| 101|Homo sapiens Leydig insulin-like hormone
protein.
Length = 101
Score = 31.9 bits (69), Expect = 2.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 295 VRMLVR*YGKPSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPS 426
VR LVR G P S +AR + + HH+H +++NP+
Sbjct: 39 VRALVRVCGGPRWSTEARRPAAGGDLPQTSHHHRHHRAAATNPA 82
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 30.7 bits (66), Expect = 6.3
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +1
Query: 325 PSTSPKARHCGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLSG 504
PS+S + SS S + H SPSSS+ S ++ S+S S SP S + S
Sbjct: 56 PSSSSSSSSPSSSHSSSSPSSSHSSSSPSSSS-STSSPSSSSSSSSSSSPSSSNSSSSSS 114
Query: 505 SRFRSGG*ILPSTALARASVSNSP 576
S S S++ + +S S+SP
Sbjct: 115 SSSPSSS--SSSSSSSPSSSSSSP 136
>D83783-1|BAA12112.1| 2124|Homo sapiens KIAA0192 protein.
Length = 2124
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 576 RRVANTGPSKSSAWQNLPTGSETRPT-EKIRRETQWAVS 463
+R A TG S S N+P+ S+T+P + R W V+
Sbjct: 1338 QRSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVA 1376
>AF117755-1|AAD22033.1| 2212|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP230
protein.
Length = 2212
Score = 30.3 bits (65), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 576 RRVANTGPSKSSAWQNLPTGSETRPT-EKIRRETQWAVS 463
+R A TG S S N+P+ S+T+P + R W V+
Sbjct: 1426 QRSAETGSSSGSTASNMPSSSKTKPVLSSLERSGVWLVA 1464
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,550,356
Number of Sequences: 237096
Number of extensions: 2312372
Number of successful extensions: 4653
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -