Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1020
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    29   4.7  
At1g13600.1 68414.m01595 bZIP transcription factor family protei...    29   4.7  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   6.2  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   6.2  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   6.2  
At1g79060.1 68414.m09218 expressed protein                             28   6.2  
At5g56860.1 68418.m07095 zinc finger (GATA type) family protein ...    28   8.2  
At3g46930.1 68416.m05093 protein kinase family protein contains ...    28   8.2  
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam...    28   8.2  
At2g38570.1 68415.m04738 expressed protein ; expression supporte...    28   8.2  

>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
 Frame = +1

Query: 325 PST--SPKARHCGSSW--SINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHSPLS---F 483
           PST  SP A   GSS   S+      H  +S S  +P+ +  GST+     HSP S    
Sbjct: 134 PSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKSSSAV 193

Query: 484 SPDLL-SGSRF-RSGG*ILPSTALARASVSNSPV 579
           SP     GS   +SG  + P+T+      S SPV
Sbjct: 194 SPATSPPGSMAPKSGSPVSPTTSPPAPPKSTSPV 227


>At1g13600.1 68414.m01595 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 196

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 352 CGSSWSINGAFRHHKHRSPSSSNPSLATKGSTSELSHRHS 471
           C S + +NG   ++ + S S+    + +  STS+  H+ S
Sbjct: 41  CSSFYHLNGLINNNNYSSSSNGQDLMTSNNSTSDEDHQQS 80


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 KHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLS 501
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 KHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLS 501
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 394 KHRSPSSSNPSLATKGSTSELSHRHSPLSFSPDLLS 501
           KH+ P S  P  +T+G+ SE   +H+  S   D L+
Sbjct: 56  KHQPPKSLEPPPSTRGTNSEGDLKHNTYSSDGDSLA 91


>At1g79060.1 68414.m09218 expressed protein
          Length = 396

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = +1

Query: 328 STSPKARHCGSSW-SINGAFRHHKHRSPSSSNPSLAT---KGSTSELS---HRHSPLSFS 486
           S SPKA  C S W  + G  R  ++ S S+S  +  T   + STS L    HR S  S S
Sbjct: 112 SFSPKAPRCSSRWRDLLGLKRFSQNSSKSASTATTTTTNPRSSTSSLKQFLHRSSRSSSS 171


>At5g56860.1 68418.m07095 zinc finger (GATA type) family protein
           similar to unknown protein (pir |T04270)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 355 GSSWSINGAFRHHKHRSPSSSNPSLATKGSTS 450
           GSS S++    HH H+ PS+S+ S ++  S S
Sbjct: 27  GSSSSLHHHHHHHHHQVPSNSSSSSSSISSLS 58


>At3g46930.1 68416.m05093 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 475

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +1

Query: 337 PKARHCGSSW-SINGAFRHHKHRSPSSSNPSLATK 438
           P+ + C   W  I G+F HH     SSSN S   K
Sbjct: 437 PELKKCPKFWIHIFGSFHHHSSGGGSSSNNSALPK 471


>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus AT
           donor splice site at exon 1 and  non-consensus AC
           acceptor splice site at exon 2
          Length = 443

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 424 SLATKGSTS-ELSHRHSPLSFSPDLLSGSRFRSGG*ILPSTALARASV 564
           ++AT G T    S  H P+ +  D LSG   RS    LP+T   + S+
Sbjct: 52  AIATLGFTIFSKSSNHQPIPYDVDPLSGYGMRSESSYLPATIHKKPSI 99


>At2g38570.1 68415.m04738 expressed protein ; expression supported
           by MPSS
          Length = 302

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 467 CLWLNSLVEPFVASDGF-DEDGDRCLWCLKAPLMDQDD 357
           C W++S   PF+    F ++  D  + CL + L +++D
Sbjct: 41  CFWIDSKNSPFLGQFSFIEKPRDNFICCLSSSLSNEED 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,356,351
Number of Sequences: 28952
Number of extensions: 338902
Number of successful extensions: 905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)