Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1019
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    29   3.1  
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    29   4.1  
01_01_0826 + 6431621-6431917,6432356-6432505,6432614-6432796,643...    29   4.1  
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804     29   5.5  
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    29   5.5  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    29   5.5  
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   5.5  
06_03_0683 - 23490215-23490997                                         28   9.6  

>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 414 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEK 593
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 594 ----TTVETLDVST 623
                +  T+D+ST
Sbjct: 718 RRKLDSCATMDMST 731


>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 557 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTG 673
           WR +   +A    D   LG+ Y   +E++S+S SDC +G
Sbjct: 2   WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESG 39


>01_01_0826 +
           6431621-6431917,6432356-6432505,6432614-6432796,
           6433305-6433385,6433548-6433586,6433646-6433849,
           6433933-6434073,6434270-6434437,6434498-6434518
          Length = 427

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 166 NWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTAKRRGE-NIFLDIRVSNSSMR 8
           N S  ME    I  L RAG  VTVA     ++   RR + N+  DI V  ++ R
Sbjct: 257 NGSEEMEALNLIDILRRAGANVTVASVEDKLQVVTRRHKFNLIADIMVEEAAKR 310


>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
          Length = 1209

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
 Frame = -1

Query: 675 VPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 550
           V VLQS+P +  SS+P S K     P F+ SS  ++R S C  ++ R
Sbjct: 256 VVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 167  HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 256
            HVPM EP  I  S C  V AD    G   KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +2

Query: 614 RFYDSGAEDISSSGSDCSTGTRG 682
           R  D+GA D++SSGS+CS  +RG
Sbjct: 176 RRLDAGA-DVASSGSECSDASRG 197


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 144 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 260
           +S  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 92  ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>06_03_0683 - 23490215-23490997
          Length = 260

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 151 METGCAITSLSRAGKAVTVAKPAKAMKTAKRRGENIFLDIRVSNS 17
           ++TG   ++L++  + +T     K + +  +R E I++D+R+  S
Sbjct: 76  IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHKRAEKIYMDVRIDPS 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,671
Number of Sequences: 37544
Number of extensions: 302518
Number of successful extensions: 1033
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)