Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1016
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   7e-32
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                76   2e-14
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            32   0.52 
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   29   2.8  
SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_5367| Best HMM Match : wnt (HMM E-Value=0)                          29   4.9  
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)    28   6.4  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  134 bits (324), Expect = 7e-32
 Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
 Frame = +1

Query: 94   VFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRK 273
            V F EKF D SWE  WV S   G + GKFK TAGKF+ D E DKG++TSEDA+FY +S K
Sbjct: 756  VHFLEKFEDKSWEDRWVSSTSKGAQQGKFKWTAGKFYGDAEADKGIQTSEDAKFYGISAK 815

Query: 274  F-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLK 366
            F KPF+NEGK LV+QF+VKHEQ+IDCGGGY K
Sbjct: 816  FEKPFTNEGKTLVIQFSVKHEQNIDCGGGYAK 847



 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/70 (62%), Positives = 51/70 (72%)
 Frame = +1

Query: 457  KKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 636
            K + + FS K + ++       KDD  THLYTLIV+PDNTYEV IDNEKVESG+LE DWD
Sbjct: 825  KTLVIQFSVKHEQNIDCGGGYAKDDEMTHLYTLIVRPDNTYEVKIDNEKVESGELEKDWD 884

Query: 637  FLSPKKIKDP 666
            FL PK IKDP
Sbjct: 885  FLPPKTIKDP 894



 Score = 33.5 bits (73), Expect = 0.17
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 659 RTPEAKKPEDWDDK 700
           + PEAKKPEDWDDK
Sbjct: 892 KDPEAKKPEDWDDK 905



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +2

Query: 665 PEAKKPEDWDDK 700
           P+AKKPEDWDD+
Sbjct: 928 PDAKKPEDWDDE 939


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 47/109 (43%), Positives = 60/109 (55%), Gaps = 12/109 (11%)
 Frame = +1

Query: 376 CKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKG-KNHLIKKDIRCK--------- 525
           C L Q+    +TPY IMFGPD CG   +K+H IF +K  KN  I++    K         
Sbjct: 28  CHLFQESFGDKTPYTIMFGPDKCGED-RKLHFIFRHKNPKNGTIEEKHAKKPTGNYNSVF 86

Query: 526 DDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADW--DFLSPKKIKDP 666
           D   THL+TL+V+PDNT+EV ID E V  G L  D       P +I+DP
Sbjct: 87  DGKKTHLFTLVVRPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDP 135


>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = -3

Query: 353 PPQSMSCSCLTVNWTTKGLPSLLNG---LNLRERA*NLASSEVFKPLSSSGSLKNFPAVN 183
           P +  SC CL V W T GLP L++G   L    R   L+   +  P   S SL +   V 
Sbjct: 429 PSEQNSCQCLFVGWQTVGLPQLIHGTVALISFRRKRTLSGGSL--PRGRSRSLSS-DRVG 485

Query: 182 LNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNA 69
              P++  G +    +    S+G+  S+ +SQ   D A
Sbjct: 486 TRLPSARKGSASKIGIPRTSSTGSLGSRRSSQSSTDGA 523


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 581 KSSLTMRKLNLAT*RQTGTSFRLRKSRTPEA--KKPEDWDDKP 703
           K S T+RKL +A  ++ G S R R+ R+P++  +K +D D KP
Sbjct: 464 KKSRTLRKLTVA--KEKGASERRRRGRSPKSDEQKKKDEDSKP 504


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 314  WTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNF 195
            +TT+GLPS ++ +NL E   NL S    KP   S  + ++
Sbjct: 959  YTTQGLPSKISSVNLTEALSNLISISWSKPSDGSSLITDY 998


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 511 DIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWD 636
           D+ CKDD         V  D T E L+D+ +V+S  L  D D
Sbjct: 485 DVSCKDDKNRTALHWAVGQDKTIEGLLDDPRVQSLQLVNDQD 526


>SB_28048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 156 VLTVHPIAFPRIIRKLLLKEYI 91
           +LT H +  P++IRK+ LK+Y+
Sbjct: 73  LLTAHLVVAPKLIRKMPLKDYV 94


>SB_5367| Best HMM Match : wnt (HMM E-Value=0)
          Length = 367

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 616 RQIQLSHCQ*GLHRCCQVSQSECTNVCRHHLCS 518
           +++Q + C+   H CC+V    C      H+C+
Sbjct: 335 KEVQATRCRCKFHWCCKVKCKTCIKNVTTHICN 367


>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 2/97 (2%)
 Frame = -2

Query: 600 LIVNEDFIGVVRFHNQSVQMCVDIIFAADIFFDEMVLTL--VTEDYVYLLGSRTTNVRAE 427
           + + E F   V  HN S Q   DI+   D+      LTL       V  L  + +  +  
Sbjct: 50  IFLGETFASYVSVHNDSNQSVKDIVIKTDLQTSSQRLTLSGAANMPVAKLDPQKSYDQVI 109

Query: 426 HNLIWSLSVHVLLLQFAVKDLEVSASTVNVLFMFDSE 316
           H+ +  L  H+L+   +   L          F F  +
Sbjct: 110 HHEVKELGTHILVCAVSYSSLAGEKMYFRKFFKFQDD 146


>SB_59294| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.20004e-41)
          Length = 851

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 556 IVKPDNTYEVLIDNEKVESGDLEADWDFLSPKKI 657
           ++K + T EV  + E V++ D E  WD +SP KI
Sbjct: 677 LIKYEKTPEV--ETETVKTADGETAWDVVSPPKI 708


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,412,811
Number of Sequences: 59808
Number of extensions: 546463
Number of successful extensions: 1361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)