Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1012
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   3.7  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.0  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   8.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 AERSRAWPSVPERGRARPSAAERCSHYTSGLPEQCTA 243
           A R+   P+  +  +A P+AA R     +G+P   T+
Sbjct: 194 ASRTTTSPTKVKASKASPAAAPRSVATPTGIPTPSTS 230


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 107 PSAERSRAWPSVPERGRAFPSVAERGRARPSVVLTTQ 217
           PSA+ S+   + P+ G+  P  +     R + V TT+
Sbjct: 419 PSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTE 455


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 166 ERGRARPSAAERCSHYTSGLPEQCT 240
           E+G+  P  AE   H    L  +C+
Sbjct: 52  EKGKCTPDGAELKRHLPDALHTECS 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,682
Number of Sequences: 336
Number of extensions: 4158
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)