Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1012
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    27   4.1  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   4.1  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.2  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   7.2  

>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 331 RVDFILCVGSALSDYDYNTLMITHARQWNRL 423
           R+DF+L  G+  + Y Y + M  H+  W  +
Sbjct: 716 RIDFMLQEGALDTSYSYVSAMNAHSEYWKNV 746


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -3

Query: 316 ILFIHSSNYETVFTSFNFKVSK*IWQY 236
           IL +H+S ++ +F+ F F++++  W+Y
Sbjct: 272 ILDVHTSYWKHMFSLFGFQINENDWKY 298


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 25/110 (22%), Positives = 45/110 (40%)
 Frame = -3

Query: 445 GTHPLFTRGGSTDVRVLSLMYYSRSRTMHCQRTK*NQLASSIFILFIHSSNYETVFTSFN 266
           G    F+R GS +++         S TMH ++ +    +++IFI  +  ++      +  
Sbjct: 676 GIKKAFSRKGSWNLQ--QFFRSDNSGTMHMEQLERYHASANIFIQMLRKTDVSNSVCADC 733

Query: 265 FKVSK*IWQYIARVIHLCSENNARPRSAALGHARERSATLGNARPRSGAL 116
             V    W  I   + LC E +   RS     ++ RS  L +   +S  L
Sbjct: 734 GSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSLSQQSKVL 783


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 134 PSVPERGRAFPSVAERGRARPSVVLTTQVDYP 229
           P++P RG   PS+  R  +RPSV+   QV  P
Sbjct: 112 PALPSRGT--PSLPSRPGSRPSVLNQEQVPPP 141


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -2

Query: 770 GSRHLSWG*AILFLK*LTASFVFLNVLNGLGANYELCT 657
           GS     G A LFL  +  SFV   V+N LG   E+CT
Sbjct: 65  GSALSESGPASLFLSYVIMSFVIWTVMNALG---EMCT 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,599
Number of Sequences: 5004
Number of extensions: 66770
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)