Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1012
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676           29   3.3  
07_01_1087 - 9959933-9960212,9960292-9960462,9960545-9961365,996...    29   3.3  
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420     29   3.3  
04_01_0516 + 6772617-6773042                                           29   4.3  
01_06_1210 + 35430143-35430796,35430912-35431004,35431397-354315...    28   7.5  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    28   9.9  

>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
          Length = 1098

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 57  TNQKYLSRYKKLEHKSRRAPSAPERG-RAFPSVAERSR 167
           T+ K  S+ KKL  K RR P+AP  G  A PS+  R R
Sbjct: 307 TDNKLESQIKKLLDKKRRQPTAPSWGPPATPSLHLRQR 344


>07_01_1087 -
           9959933-9960212,9960292-9960462,9960545-9961365,
           9961985-9962455
          Length = 580

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 98  QIAPSAERSRAWPSVPERGRAFPSVAERG 184
           ++AP  +R +A  S+P+RG+A P+  E G
Sbjct: 323 ELAPEPKRDKAATSMPKRGKAAPAQFELG 351


>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
          Length = 256

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 118 ALPSVAERSRAWPSVPERGRARPSAAERCSH 210
           ALP+    SR+ P V   GRA P+AAER  H
Sbjct: 140 ALPATDAASRS-PHVGHVGRAAPAAAERLQH 169


>04_01_0516 + 6772617-6773042
          Length = 141

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 108 RAPSAPERGRAFPSVAERSRAWPSAAERGRALFSLHKW 221
           R  SA  +GR   +   RSR WPS A       + H W
Sbjct: 76  RRSSAAAKGRTRTATTWRSRRWPSRATTTTETAAAHGW 113


>01_06_1210 +
           35430143-35430796,35430912-35431004,35431397-35431546,
           35431817-35432076,35433378-35433641,35434475-35434682
          Length = 542

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +3

Query: 48  NIKTNQKYLSRYKKLEHKSRRAPSAPERGRAFPSVAERSRAWPSAAERGRALFSLHKWIT 227
           N+K   K L   + +EH+ R  P+AP R R    +    R+ P    R R +    +++T
Sbjct: 170 NVKA-VKALKSLRHMEHRERHCPTAP-RPRCLVPLPTGYRS-PLPWPRSRDM----EYLT 222

Query: 228 RAMYCQIYFETLKLND 275
           +++ C ++F    + D
Sbjct: 223 KSLLCAVWFGCAVIGD 238


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 99  KSRRAPSAPERGRAFPSVAERSRAWPSAAERGRA 200
           K R   +A E+GRA  +  E+ RA  +A E+GRA
Sbjct: 142 KGRAKVAAFEKGRAKVAAFEKGRAKMAAFEKGRA 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,565,922
Number of Sequences: 37544
Number of extensions: 419191
Number of successful extensions: 1230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)