Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1012
         (801 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L27476-1|AAA61300.1| 1116|Homo sapiens X104 protein.                   32   2.1  
BC027592-1|AAH27592.1| 1190|Homo sapiens tight junction protein ...    32   2.1  
AL358113-3|CAM13389.1| 1043|Homo sapiens tight junction protein ...    32   2.1  
AL358113-2|CAH70868.1| 1190|Homo sapiens tight junction protein ...    32   2.1  
AL358113-1|CAH70867.1|  993|Homo sapiens tight junction protein ...    32   2.1  
AF489824-1|AAM28524.1|  993|Homo sapiens tight junction protein ...    32   2.1  
AF177533-4|AAD56219.2| 1020|Homo sapiens tight junction protein ...    32   2.1  
AF177533-3|AAC02527.2| 1167|Homo sapiens tight junction protein ...    32   2.1  
AF177533-2|AAD56218.2| 1043|Homo sapiens tight junction protein ...    32   2.1  
AF177533-1|AAD20387.2| 1190|Homo sapiens tight junction protein ...    32   2.1  
AK001445-1|BAA91696.1|  409|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AB083157-1|BAB93864.1|  757|Homo sapiens WINS1 protein with Dros...    31   3.7  
BC010363-1|AAH10363.1|  436|Homo sapiens LINS1 protein protein.        31   4.8  
AL590383-2|CAH71374.2| 2279|Homo sapiens zinc finger protein 318...    31   4.8  
AL583834-6|CAI14459.2| 2279|Homo sapiens zinc finger protein 318...    31   4.8  
AL358113-5|CAH70870.1|  161|Homo sapiens tight junction protein ...    31   6.4  
AK074088-1|BAB84914.1|  567|Homo sapiens FLJ00159 protein protein.     30   8.5  

>L27476-1|AAA61300.1| 1116|Homo sapiens X104 protein.
          Length = 1116

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>BC027592-1|AAH27592.1| 1190|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1190

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AL358113-3|CAM13389.1| 1043|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1043

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AL358113-2|CAH70868.1| 1190|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 1190

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AL358113-1|CAH70867.1|  993|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 993

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AF489824-1|AAM28524.1|  993|Homo sapiens tight junction protein 2
           protein.
          Length = 993

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AF177533-4|AAD56219.2| 1020|Homo sapiens tight junction protein
           ZO-2 isoform C protein.
          Length = 1020

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 126 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 164


>AF177533-3|AAC02527.2| 1167|Homo sapiens tight junction protein
           ZO-2 isoform C protein.
          Length = 1167

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 126 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 164


>AF177533-2|AAD56218.2| 1043|Homo sapiens tight junction protein
           ZO-2 isoform A protein.
          Length = 1043

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AF177533-1|AAD20387.2| 1190|Homo sapiens tight junction protein
           ZO-2 isoform A protein.
          Length = 1190

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSAAER 201
           +S  +  +ER  L S   RSR+W   PERGR    A  R
Sbjct: 149 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERARSR 187


>AK001445-1|BAA91696.1|  409|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10583 fis, clone NT2RP2003629. ).
          Length = 409

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 336 NSLHPYLFYLYTAVTTRQCSRHLTLKFQNKSG 241
           N  H Y+FYL  AV+ + CS   +L++ N  G
Sbjct: 23  NDSHDYIFYLNPAVSDQDCSTATSLEWANTCG 54


>AB083157-1|BAB93864.1|  757|Homo sapiens WINS1 protein with
           Drosophila Lines (Lin) homologous domain protein.
          Length = 757

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 336 NSLHPYLFYLYTAVTTRQCSRHLTLKFQNKSG 241
           N  H Y+FYL  AV+ + CS   +L++ N  G
Sbjct: 23  NDSHDYIFYLNPAVSDQDCSTATSLEWANTCG 54


>BC010363-1|AAH10363.1|  436|Homo sapiens LINS1 protein protein.
          Length = 436

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 336 NSLHPYLFYLYTAVTTRQCSRHLTLKFQNKSG 241
           N  H Y+FYL  AV+ + CS   +L++ N  G
Sbjct: 23  NDSHDYVFYLNPAVSDQDCSTATSLEWANTCG 54


>AL590383-2|CAH71374.2| 2279|Homo sapiens zinc finger protein 318
           protein.
          Length = 2279

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  HKSRRAPSAPERGRAFPSVAERSRAWPSAAERGRALF 206
           H+ RRA  +P RGR       R+R    +  RGR LF
Sbjct: 63  HRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLF 99


>AL583834-6|CAI14459.2| 2279|Homo sapiens zinc finger protein 318
           protein.
          Length = 2279

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 96  HKSRRAPSAPERGRAFPSVAERSRAWPSAAERGRALF 206
           H+ RRA  +P RGR       R+R    +  RGR LF
Sbjct: 63  HRGRRASPSPPRGRRVSPSPPRARRGSPSPPRGRRLF 99


>AL358113-5|CAH70870.1|  161|Homo sapiens tight junction protein 2
           (zona occludens 2) protein.
          Length = 161

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 85  KSLSTNRAERRALPSVAERSRAWPSVPERGRARPSA 192
           +S  +  +ER  L S   RSR+W   PERGR    A
Sbjct: 126 RSFRSGYSERSRLNSHGGRSRSWEDSPERGRPHERA 161


>AK074088-1|BAB84914.1|  567|Homo sapiens FLJ00159 protein protein.
          Length = 567

 Score = 30.3 bits (65), Expect = 8.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 163 PERGRARPSAAERCSHYTSGL 225
           P+RGR+RP A + CS + +GL
Sbjct: 156 PKRGRSRPGALQSCSAFPTGL 176


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,673,270
Number of Sequences: 237096
Number of extensions: 2370817
Number of successful extensions: 4777
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4737
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)