Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1012
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical p...    29   5.1  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>U13875-13|AAA21156.2|  470|Caenorhabditis elegans Hypothetical
           protein C26E6.2 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 67  NICHGIKSLSTNRAERRALPSVAERSRAWPSVPERGRARP 186
           N CH +KS++ +  +R+ L   +  S+A P  P++ +A P
Sbjct: 225 NYCHPVKSINRSYMQRK-LSRASHVSQALPIAPQQIKAEP 263


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
            protein F26D2.10 protein.
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 324  PYLFYLYTAVTTRQCSRHLTL 262
            PYL+ +YTA+  ++C   LTL
Sbjct: 1103 PYLYGVYTAIVMKECKNLLTL 1123


>Z93379-8|CAC35812.2|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.11 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 685 AWVLIMNYVHCAIVHCALCTV 623
           AW L +N+  CA++  ALCT+
Sbjct: 61  AWPLFLNHFLCAMLDVALCTL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,029,361
Number of Sequences: 27780
Number of extensions: 382256
Number of successful extensions: 1053
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)