Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1011
         (707 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    43   0.006
UniRef50_A4G1N4 Cluster: Sensor protein; n=2; Oxalobacteraceae|R...    35   2.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.2 bits (97), Expect = 0.006
 Identities = 19/22 (86%), Positives = 19/22 (86%)
 Frame = -3

Query: 510 FFLLRWVDELTAHLVLSC*WSP 445
           F LLRWVDELTAHLVLS  WSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A4G1N4 Cluster: Sensor protein; n=2; Oxalobacteraceae|Rep:
           Sensor protein - Herminiimonas arsenicoxydans
          Length = 799

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 323 IQNVINYKSNHVWIRCLRVTIKTTFQIHVVCNLWNSNYRV 204
           I N INY  +H  I+C     +   Q HVVCN+ +  Y +
Sbjct: 692 ISNAINYSPDHTKIQCSARAQQLNDQTHVVCNIRDHGYGI 731


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,802,059
Number of Sequences: 1657284
Number of extensions: 13708216
Number of successful extensions: 20526
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20523
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)