Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1011
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    28   1.1  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.0  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +1

Query: 538 DYRNLINRRHFLVQYY 585
           DY NLIN RHF+++++
Sbjct: 105 DYVNLINARHFMIEHF 120


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 484 AHSPPGVKLLVEPIDIYNVNAPSTLR 407
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 282 TLFTSNHKDHISNPRCL*LVEFKLSGPRCGWHLHDYFNIFIFFNSAF 142
           T+F  +   + S   C  L  F+ +GP C W +  Y  IF+   ++F
Sbjct: 267 TIFIQSGTAYFST--CSLLYFFERTGPICPWPMAYYIIIFMDIENSF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,902
Number of Sequences: 5004
Number of extensions: 60369
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)