Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1011
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical...    27   9.9  

>AC024800-4|AAF60722.1|  514|Caenorhabditis elegans Hypothetical
           protein Y49F6A.4 protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 680 ALWYKLERRWREN*SYIIIRLYQNKSYQSLTP 585
           A+W +LE+  REN  ++ + LY+ K  Q  +P
Sbjct: 427 AIWKRLEKFARENHRFLTLSLYREKQAQRRSP 458


>AC024751-10|AAY55884.1|  654|Caenorhabditis elegans Hypothetical
           protein Y18H1A.15 protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 201 RCGWHLHDYFNIFIFFNSAFL 139
           R  W LHDY N F  FN  FL
Sbjct: 212 RINWFLHDYAN-FTMFNKLFL 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,205,663
Number of Sequences: 27780
Number of extensions: 332526
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)