Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1009
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   139   2e-33
AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical...    36   0.021
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    29   2.4  
U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    28   4.2  
Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural RNA-bi...    27   9.7  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  139 bits (336), Expect = 2e-33
 Identities = 67/157 (42%), Positives = 104/157 (66%)
 Frame = +2

Query: 20  SLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLK 199
           +LL   + ++ + P +     D SWRVRYMVA+K +E+Q  +G ++  T L  ++  LLK
Sbjct: 235 TLLDKANKKKLIEPILIELFDDKSWRVRYMVAEKLIEIQNVLGEDMDTTHLVNMYTNLLK 294

Query: 200 DSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSGLAFVIMGL 379
           D E EVR AA  ++++F +NL +  +++II   +L   K+LV D NQ VKS LA VIMGL
Sbjct: 295 DPEGEVRCAATQRLQEFALNLPEDKRQNIICNSLLNVAKELVTDGNQLVKSELAGVIMGL 354

Query: 380 SPIVGRQNTIEHFLPLFLTQLKDECSEVRLNIISNLE 490
           +P++G++ T+   LP+++  L D+  EVRLNIIS+L+
Sbjct: 355 APLIGKEQTVSELLPIYMQLLNDQTPEVRLNIISSLD 391



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 33/159 (20%), Positives = 65/159 (40%)
 Frame = +2

Query: 14  VASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQAL 193
           V  ++    +   ++P +   A D  WRVR  +      L   +G E     L  +    
Sbjct: 393 VNEVIGAAQLSTSLLPAIVGLAEDGKWRVRLAIVQFMPLLASQLGQEFFDEKLLPLCLNW 452

Query: 194 LKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSGLAFVIM 373
           L D    +R A+   +K+    L +        T I+P+++ L  D N   +    F + 
Sbjct: 453 LTDHVFSIREASTLIMKE----LTQKFGGQWASTNIVPKMQKLQKDTNYLQRMTCLFCLN 508

Query: 374 GLSPIVGRQNTIEHFLPLFLTQLKDECSEVRLNIISNLE 490
            LS  + ++  ++  +P+    ++D+   VR N   +L+
Sbjct: 509 TLSEAMTQEQILKEIMPIVKDLVEDDVPNVRFNAAKSLK 547



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/69 (21%), Positives = 33/69 (47%)
 Frame = +2

Query: 14  VASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQAL 193
           ++  +  E + + +MP V+    D    VR+  A     + + + P    +++  + + L
Sbjct: 510 LSEAMTQEQILKEIMPIVKDLVEDDVPNVRFNAAKSLKRIGKNLTPSTLTSEVKPLLEKL 569

Query: 194 LKDSEAEVR 220
            KDS+ +VR
Sbjct: 570 GKDSDFDVR 578


>AC024798-12|AAK29920.2| 1725|Caenorhabditis elegans Hypothetical
            protein Y48G9A.1 protein.
          Length = 1725

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 27/108 (25%), Positives = 47/108 (43%)
 Frame = +2

Query: 128  ELQQAVGPELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILP 307
            EL + +G ++   D+  +  A  K  E   R   A  + +   N+ K    H +  ++ P
Sbjct: 1015 ELVRKMGDKVIN-DILPVLDANQKSEEVAKRVGVAIALHEIIGNMSKEVTNHYLGAIVAP 1073

Query: 308  QIKDLVCDANQHVKSGLAFVIMGLSPIVGRQNTIEHFLPLFLTQLKDE 451
             ++  +CD ++ V+   A     L  +VG +   E   PL L QL  E
Sbjct: 1074 -VRRAICDESELVREAAADTFTVLYHVVGNEALDEIICPL-LEQLTPE 1119


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
            protein ZK1248.10 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 248  FCMNLDKAHQEHIIMTMILPQIKDLVCDANQHV---KSGLAFVIMGLSPIVGRQNTIEHF 418
            F + L K  + H++    +  +   +  A +H+   KS        L+P    Q TIE  
Sbjct: 836  FALALFKICEPHVLQCKTIGTVHQCLSKAQEHIIDFKSLAQVAFNELNPFP--QKTIETK 893

Query: 419  LPLFLTQLKD 448
              L+LTQLKD
Sbjct: 894  RQLYLTQLKD 903


>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 116 QRPCTAPSTKYLRHEPARSASHVAPYPRVPAEKPQ 12
           +RP  A    Y+   PAR A ++ P    P  +PQ
Sbjct: 211 ERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQ 245


>Z82276-5|CAH60784.1|  261|Caenorhabditis elegans Hypothetical
           protein K03D3.11 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 349 LNVLVGITHQVLDLWQDHGHDNVFLMS 269
           L+ LVG+   + D+ QDH H  + LM+
Sbjct: 31  LSYLVGMVWNIFDMDQDHNHSTLNLMA 57


>U61945-5|AAB03128.1|  517|Caenorhabditis elegans Hypothetical
           protein C49C8.1 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 83  DTSWRVRYMVADKFVELQQAVGPELARTDL 172
           D  W + YMVA+ FVEL      E+A  +L
Sbjct: 295 DDIWSLMYMVAEFFVELPWTSNEEIALEEL 324


>AF067946-4|AAC17683.1|  345|Caenorhabditis elegans Hypothetical
           protein W02G9.3 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +2

Query: 119 KFVELQQAVGPELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTM 298
           +F++    V   LA  DL+++ + L+K     ++A   GK+  + +     + + +    
Sbjct: 226 RFLQRVYPVEHTLA-VDLSKMNEVLMKVISDTLKADGTGKLPTYSVEFKARNNDSVAKNS 284

Query: 299 ILPQIKDLVC 328
           +L  + D VC
Sbjct: 285 VLQMVDDAVC 294


>Z35601-1|CAA84667.2|  320|Caenorhabditis elegans Hypothetical
           protein R10E9.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 233 GKVKDFCMNLDKAHQEHI---IMTMILPQIKDLVCDANQHVKSG 355
           GKV+D  +  DKA Q H     +T    ++ D VC+ + H  +G
Sbjct: 158 GKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEING 201


>AB036738-1|BAB13470.1|  320|Caenorhabditis elegans neural
           RNA-binding protein MSI-1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 233 GKVKDFCMNLDKAHQEHI---IMTMILPQIKDLVCDANQHVKSG 355
           GKV+D  +  DKA Q H     +T    ++ D VC+ + H  +G
Sbjct: 158 GKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVCEIHFHEING 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,413,971
Number of Sequences: 27780
Number of extensions: 309342
Number of successful extensions: 949
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)