Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1009
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    26   0.24 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.1  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    21   6.7  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 483 TSRGGPVPNSPYSEWYYNLLGRC 551
           T+RGG    +PY  W  N  G C
Sbjct: 101 TNRGGSPKLTPYPNWAQNKAGAC 123


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 548 TAQ*IVIPLTIGRIGYRAPPRGWK 477
           TA+ +V P  IG      PP  WK
Sbjct: 399 TARNVVAPFLIGSRRTSPPPEDWK 422


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -2

Query: 167 LYELALDQQLVAALRTYQRPCTAPSTKYLRHEPARSASHV 48
           LYELAL+Q +   LR         + K L+++  +   ++
Sbjct: 317 LYELALNQDVQKKLREEINTFCPKNNKELKYDDIKEMEYL 356


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 363 KARPDLTCWLASHTKSLICGKIMVMIMC 280
           KA  DL     SH+ + + G + ++++C
Sbjct: 218 KAMSDLVICKLSHSNASVAGGMEMILLC 245


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 363 KARPDLTCWLASHTKSLICGKIMVMIMC 280
           KA  DL     SH+ + + G + ++++C
Sbjct: 218 KAMSDLVICKLSHSNASVAGGMEMILLC 245


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 472 VKSDFGTFILQLC 434
           +K DFGT+  Q C
Sbjct: 10  LKKDFGTYFQQYC 22


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 106 VPHPPRSISGT 74
           VP PPRS+ G+
Sbjct: 56  VPQPPRSLEGS 66


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 325 HQVLDLWQDHGHDNVFLMSFIQVHT 251
           HQ+  L Q H      L SF+Q H+
Sbjct: 72  HQMQQLLQQHILSPTQLQSFMQQHS 96


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 168 SVRASSGPTACCSS 127
           S  ASS PT+ CSS
Sbjct: 594 SSSASSAPTSVCSS 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,434
Number of Sequences: 438
Number of extensions: 3875
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)