Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1008
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.4  
SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr 3|||M...    26   5.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.9  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -2

Query: 252 KPSNST---FTNNSRPKLAKSVQPFSSFSDTNEQ 160
           KPS  T   F NN++P +AKS    ++ S+TN++
Sbjct: 671 KPSTRTSPPFVNNTKPIVAKSPVTVTASSETNKK 704


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 225 NSRPKLAKSVQPFSSFSDTNEQQFIF 148
           N+ P+L +S++P+ S    + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPCC1795.06 |map2||P-factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -2

Query: 240 STFTNNSRPKLAKSVQPFSSFSDTNEQQFIFI*IHILNFCDCTLLTTI 97
           +TF N  RP L K  +      + +E+ + F+  +I+   + + +T +
Sbjct: 146 NTFVNPDRPNLKKRTEEDEENEEEDEEYYRFLQFYIMTVPENSTITDV 193


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 430 LADPADFVVPQSINKIPKVLYKINLKQKK 344
           L  P DF+ P+    +P +L +++ +QKK
Sbjct: 45  LGPPLDFIRPKEKVTLPPLLKEVSFQQKK 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,593,891
Number of Sequences: 5004
Number of extensions: 49551
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)