Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1008
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1176 + 31494318-31495685                                         29   2.6  
07_03_1377 + 26155030-26155671                                         29   3.5  
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    28   8.0  

>04_04_1176 + 31494318-31495685
          Length = 455

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 132 LNFCDCTLLTTIFGCIVLSIFRH**FNPLDNS--IYILFHVLL 10
           L  CDC  L  + G +VL +FR   FN  DNS   Y L + LL
Sbjct: 4   LQDCDCKSLVAVPGSVVLHLFRL--FNQQDNSWQKYTLAYFLL 44


>07_03_1377 + 26155030-26155671
          Length = 213

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 674 DPDVAKKRREQFIELHGDKGERLIERLGLGIDGDSGRRLEDQRKRDE 534
           D DV     E+   L   + E ++ER+GLG+ G  G  L+ +  RDE
Sbjct: 88  DEDVVAAVEEEEAHLSKVEVEEIMERIGLGV-GGHGEGLKARMGRDE 133


>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 309  TKFNFEHFHIHLTYLILPFKPSNSTFTNNSRPKLAKSV 196
            T+F F HF +H   +I  F+P +   T +S  +  +++
Sbjct: 2578 TQFYFRHFEVHPIKIIASFRPGSPYTTYSSAQEALRAL 2615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,035
Number of Sequences: 37544
Number of extensions: 300326
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)