Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1008
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81506-3|CAB04130.1|  197|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   9.5  

>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 348 FCFKFILYNTLGILFID 398
           +CFKF+LYNT  I+ ID
Sbjct: 401 YCFKFVLYNTRTIVNID 417


>Z81506-3|CAB04130.1|  197|Caenorhabditis elegans Hypothetical
           protein F16H6.4 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = -1

Query: 415 DFVVPQSINKIPKVLYKINLKQKKESVHRGTHQREN 308
           +F + QS  K+ ++  KI+ ++ + ++H G+H ++N
Sbjct: 61  NFKMEQSYEKVDEIPEKIDAERIRYAIHLGSHSQKN 96


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 173 TLTNSNSFLFKYI-F*IFATVHFLPRFLVVLYCRYF 69
           T+T     +F  + F +F T  FLP F+V  +CR F
Sbjct: 33  TVTTKTEQVFGMLNFALFITCLFLPCFIVCFWCRCF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,185
Number of Sequences: 27780
Number of extensions: 268205
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)