Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1008
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.89 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.89 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   4.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.3  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 548 SGPPASVRCHHRCPSRAA 601
           SG P   RCH RC +R A
Sbjct: 473 SGLPEPCRCHARCIARLA 490


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 548 SGPPASVRCHHRCPSRAA 601
           SG P   RCH RC +R A
Sbjct: 473 SGLPEPCRCHARCIARLA 490


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 587 GIDGDSGRRLEDQRKRDEGYLGGINAFF 504
           G +  SG   +   + DEG++G    FF
Sbjct: 15  GTNCSSGSSSDSDGQTDEGFVGDSQGFF 42


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 550 RGKEMKDI*VALTRFLP*IQW 488
           RGK + DI V L+ F   ++W
Sbjct: 186 RGKNVVDIGVDLSEFYTSVEW 206


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 659 KKRREQFIELHGDKGERLIERLGLGIDGDSGRRLEDQRKRDEGY 528
           KK+  ++ +LH +K + L ER        S  R +   K +  Y
Sbjct: 246 KKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYKNENSY 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,953
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)