Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1008
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ...    29   2.2  
At4g28740.1 68417.m04110 expressed protein                             29   2.9  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    29   3.8  
At5g39970.1 68418.m04847 expressed protein low similarity to up-...    28   5.0  

>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
           Helicase [Arabidopsis thaliana] GI:10944747
          Length = 606

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 677 FDPDVAKKRREQFIELHGDKGERLI 603
           FD D AKK  ++F++L+GD G   I
Sbjct: 22  FDEDSAKKCLDRFVDLYGDDGRDFI 46


>At4g28740.1 68417.m04110 expressed protein
          Length = 347

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 313 PFDVSLDGRIPFFVLSLFYTIL*VFYLSIEALRSLPGQLVS**VIG 450
           P ++S D RI   VLS F ++   FYL+  A  SL G + +  +IG
Sbjct: 88  PSEISADARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIG 133


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 479 WTKPLNLWQKTR*CHLDILHLFSSGPPASVRCHHRCPSRAARLISL 616
           + KP + W  +R   L + +      P    CH+RCP R   L+SL
Sbjct: 406 YLKPRSSWSISRGSLLILPNFMGISRPICSSCHNRCPQRII-LVSL 450


>At5g39970.1 68418.m04847 expressed protein low similarity to
           up-regulated by thyroid hormone in tadpoles; expressed
           specifically in the tail and only at metamorphosis;
           membrane bound or extracellular protein; C-terminal
           basic region [Xenopus laevis] GI:1234787
          Length = 690

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -2

Query: 261 LPFKPSNSTFTNNSRPKLAKSVQP--FSSFSDTNEQQ 157
           LPF PS+S+  +NS  K+   + P  + + SD N+Q+
Sbjct: 494 LPFHPSSSSNISNSTTKIENPIFPVMWYNHSDINQQE 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,843
Number of Sequences: 28952
Number of extensions: 251583
Number of successful extensions: 567
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)