Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1006
         (502 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   2.7  
UniRef50_Q0IDF5 Cluster: Glycosyl transferase WecB/TagA/CpsF fam...    33   3.6  

>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +2

Query: 461 RGGARYPIRPIVSR 502
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q0IDF5 Cluster: Glycosyl transferase WecB/TagA/CpsF family
           protein; n=13; Cyanobacteria|Rep: Glycosyl transferase
           WecB/TagA/CpsF family protein - Synechococcus sp.
           (strain CC9311)
          Length = 303

 Score = 33.1 bits (72), Expect = 3.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 253 HGFIFEHSWPRFDIRI--LNPKPYLFIA*VNEGVLGLTKLRSVSSGIHLTLGGS 98
           HG++ E  WP+ +  +  LNP   L    V    L + +L++  +G+ + +GGS
Sbjct: 183 HGYLTEEDWPQLEANLCELNPDLVLVALGVPRQELWVQRLKASQTGVWMGVGGS 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,437,152
Number of Sequences: 1657284
Number of extensions: 9406119
Number of successful extensions: 15943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15939
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)