Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1006
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   4.8  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   4.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.4  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.4  

>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 422 LPHPSNRNGLLLHGRNR 372
           LP+  N  GL LHG NR
Sbjct: 198 LPYTGNSRGLYLHGLNR 214


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 128 FRYPLNIRWIEQSIIYRRKNNPLI 57
           FRYP+N R   +S  Y  K  PL+
Sbjct: 149 FRYPMNQRSTRKSQFYSSKFKPLL 172


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 359 YHHPAYFCREAVIRFGSKGGAAVVTILETLELISRGG 469
           +  P+ F  E V+     GG AVV +  TLE I + G
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 194 LWI*NPNIKPWPRMFKNKT 250
           L+I NPN++P P+  K +T
Sbjct: 14  LYIPNPNVEPTPKPTKRRT 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,994,039
Number of Sequences: 5004
Number of extensions: 38873
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)