Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1006
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         30   1.2  
02_05_0271 + 27342468-27343577                                         29   1.6  
02_02_0262 - 8396755-8397244,8398659-8398705                           27   8.5  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 441 SSIVTTAAPPFEPKRITA 388
           SS+ + AAPPF+P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>02_05_0271 + 27342468-27343577
          Length = 369

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 359 YHHPAYFCREAVIRFGSKGGAAVVTILETLELISRGGARYPIRP 490
           +HH  +     ++RFG  GG A+   LE L   S   A  P+ P
Sbjct: 21  HHHHHHGASPDLLRFGGSGGGAMAARLEHLLSSSSASAFRPLPP 64


>02_02_0262 - 8396755-8397244,8398659-8398705
          Length = 178

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 471 APPRDISSKVSSIVTTAAPP 412
           +PPR++++K ++   TAAPP
Sbjct: 151 SPPREVAAKEATAAETAAPP 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,658,016
Number of Sequences: 37544
Number of extensions: 271582
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)