Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1006
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z99171-4|CAB16313.1|  722|Caenorhabditis elegans Hypothetical
           protein F47G4.4 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 81  IDNRLLDPPNVKWIPELTDLSLVRPRTPSFT 173
           +DN  +D   VK +PELT+LS + PR+P  +
Sbjct: 312 VDNSPID--EVKALPELTELSNLPPRSPGLS 340


>Z81495-8|CAB04063.1|  239|Caenorhabditis elegans Hypothetical
           protein F08G2.8 protein.
          Length = 239

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 247 FIFEHSWPRFDIRILNPKPYLF 182
           ++ +  WP+FD R +NP+P  F
Sbjct: 200 YLPQDKWPQFDQRWMNPQPTQF 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,637
Number of Sequences: 27780
Number of extensions: 218599
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)