Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1006
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 440 ETLELISRGGARYPIRP 490
           + +E I R  +RYP+RP
Sbjct: 111 QDIETIIRRNSRYPLRP 127


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 133 VSSGIHLTLGGSSNRLSIEG 74
           +  G+ LTLG  +  +SI+G
Sbjct: 80  IQDGVPLTLGYVTREVSIDG 99


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -1

Query: 469 PPSRYKF*GLKYSYNGCPTLRTETDYCFT 383
           P  ++K     +S   CP     +DY FT
Sbjct: 266 PIGKFKHEAGSHSCEACPAHSKSSDYGFT 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,935
Number of Sequences: 438
Number of extensions: 3024
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)