Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1003
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0682 + 24251861-24251911,24252036-24252086,24255244-242553...    56   2e-08
06_01_0311 - 2243117-2243185,2243321-2243400,2243554-2243620,224...    56   3e-08
02_02_0030 - 6207784-6208154,6208286-6211310                           30   1.7  
02_02_0034 - 6246183-6246553,6246672-6249699                           29   2.3  
02_02_0032 - 6227556-6227926,6228322-6231085                           29   2.3  
03_05_0511 + 25056018-25059107                                         29   3.0  
02_01_0061 + 442288-442411,442445-445498,445630-446000                 28   7.0  

>01_05_0682 +
           24251861-24251911,24252036-24252086,24255244-24255310,
           24255405-24255484,24255631-24255696
          Length = 104

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = +1

Query: 118 ATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTLVPSCFDARIVGCICEEHATA--I 291
           ATGLER+EL A   G +  F+M       GT+E P ++ S ++ RIVGC   E      +
Sbjct: 4   ATGLEREELAAELKG-EKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGEGEDEHDV 62

Query: 292 TWLWLHKDQPRRCE-CGHWYKL 354
            W WL KD+P  C  C  ++ L
Sbjct: 63  VWFWLKKDEPHECPVCSQYFVL 84


>06_01_0311 -
           2243117-2243185,2243321-2243400,2243554-2243620,
           2245176-2245226,2245317-2245402,2245501-2245612
          Length = 154

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = +1

Query: 49  RSVILPTARRGYADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRENPTL 228
           R++   T     A   + D +  ATGLER+E+ A   G    F+M       GT+E P +
Sbjct: 30  RALFFSTLDAAQARTRVEDVMPIATGLEREEIAAELQGKKR-FDMDAPVGPFGTKEAPAV 88

Query: 229 VPSCFDARIVGCICEEHATA--ITWLWLHKDQPRRCE-CGHWYKL 354
           + S ++ RIVGC   E      + W WL K +P  C  C  ++ L
Sbjct: 89  IQSYYNKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCTQYFSL 133


>02_02_0030 - 6207784-6208154,6208286-6211310
          Length = 1131

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 210 GSC*LLHYLHVEGVIIAGLKGQEFL 136
           G+C LL YLH+EG ++ G   Q F+
Sbjct: 656 GNCVLLEYLHMEGNLLTGSIPQSFM 680


>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 210 GSC*LLHYLHVEGVIIAGLKGQEFL 136
           G C LL YLH+EG ++ G   Q F+
Sbjct: 656 GKCVLLEYLHMEGNLLTGSIPQSFM 680


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 210 GSC*LLHYLHVEGVIIAGLKGQEFL 136
           G C LL YLH+EG ++ G   Q F+
Sbjct: 656 GKCVLLEYLHMEGNLLTGSIPQSFM 680


>03_05_0511 + 25056018-25059107
          Length = 1029

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 236 PALMLVLLDAFVKNTLQPSPGFGYTRTNRAVASVDIGTN*LRSHS 370
           P L+L  LD  +   L  +P   YTR +R ++ V+   + LRSHS
Sbjct: 130 PCLVLNKLDRLISE-LHLTPAEAYTRLHRIISDVNSIHSALRSHS 173


>02_01_0061 + 442288-442411,442445-445498,445630-446000
          Length = 1182

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 210 GSC*LLHYLHVEGVIIAGLKGQEFL 136
           G C LL YLH+EG ++ G   + F+
Sbjct: 707 GKCVLLEYLHMEGNLLTGSIPRSFM 731


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,597,806
Number of Sequences: 37544
Number of extensions: 391127
Number of successful extensions: 861
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)