Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1003
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical pr...   100   7e-22
U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain (pr...    31   0.51 
AF106575-1|AAC78174.2|  537|Caenorhabditis elegans Aldehyde dehy...    29   3.6  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical
           protein F26E4.9 protein.
          Length = 132

 Score =  100 bits (240), Expect = 7e-22
 Identities = 44/88 (50%), Positives = 63/88 (71%), Gaps = 1/88 (1%)
 Frame = +1

Query: 100 PDPLEHATGLERKELLALQAGNDDPFNMKVVKKS-AGTRENPTLVPSCFDARIVGCICEE 276
           PDPLEHATG E+K LLA  AG DD +  KV  ++ A T++ P LVPS +D RI+GC+CE+
Sbjct: 40  PDPLEHATGREKKMLLARLAG-DDRYEPKVYYRAEASTKQKPNLVPSHYDFRIIGCMCEQ 98

Query: 277 HATAITWLWLHKDQPRRCECGHWYKLIE 360
            +  + ++ + K  P+RCECGHW+K ++
Sbjct: 99  DSGHVNFMTIRKGDPKRCECGHWFKGVD 126


>U88181-2|AAB42303.1|  491|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 7 protein.
          Length = 491

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +1

Query: 85  ADKMMPDPLEHATGLERKELLALQAGNDDPFNMKVVKKSAGTRE 216
           A ++ PD  E   GLE  + L  QAG  D + +  VK++A  RE
Sbjct: 351 ATEVNPDHREAKEGLEHAKRLKTQAGKRDYYKILGVKRNASKRE 394


>AF106575-1|AAC78174.2|  537|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 2 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/78 (30%), Positives = 34/78 (43%)
 Frame = +2

Query: 101 LIPWNMPLAWKGRNSWPFRPAMMTPST*R**RSQQEPVKTQLWYLPALMLVLLDAFVKNT 280
           +IPWN PL  +   +W   PA+   +T       +  VKT L  L    L+    F +  
Sbjct: 202 IIPWNFPLLMQ---AWKLAPALAMGNT----VVMKVAVKTPLSALHVASLIKEAQFPEGV 254

Query: 281 LQPSPGFGYTRTNRAVAS 334
           +   PG G T    A+AS
Sbjct: 255 VNIIPGRG-TDAGEAIAS 271


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 421 VSAVTLLDNKLKELLFKGVASQSIC 347
           VSA  L+DNK + L+ K V +++IC
Sbjct: 348 VSARDLMDNKFRNLVDKQVTARNIC 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,077,670
Number of Sequences: 27780
Number of extensions: 336378
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)