Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1002
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    29   3.0  
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522...    29   3.0  
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716...    28   4.0  
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572...    28   5.2  
03_05_0324 - 23121401-23121465,23121507-23122059                       28   5.2  
12_02_0848 + 23636478-23638058                                         27   6.9  

>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 178 GRFCEELLLLGLVFITGGRTSCESARVG 261
           GR CE  ++ G+ F+  G T+CE++ +G
Sbjct: 511 GRVCECPVVKGVKFVGDGYTNCEASGIG 538


>02_05_0599 -
           30251708-30251815,30251864-30251984,30252068-30252215,
           30252303-30252480,30252587-30252625,30252704-30252799,
           30252879-30253030,30253336-30253722,30253836-30253940,
           30254083-30254098
          Length = 449

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
 Frame = -2

Query: 446 GERAHSPPYVKWLPEPIDINDVNTPP--TLRYKF*GLKYSYNGCPTLLTETHY*FKAEIV 273
           G RAH  P   W    ID   +   P      K    KY      + +      F+ EI+
Sbjct: 142 GSRAHRAPSTMWQDSAIDQRSIGQTPYEAFNSKTISYKYMVQEMCSKMQFFMLSFRLEIL 201

Query: 272 RVVVP---TRADSQEVLPPV---MNTSPNKSNSSQNLPPDRNHDPARN 147
           R ++P    + D    L  V   +     K    +   P+RNH+ +++
Sbjct: 202 RELLPHTDQKRDKASFLSEVIEYIRFLQEKVQKYEEADPERNHEDSKS 249


>04_03_0988 -
           21469811-21469831,21470823-21471047,21471327-21471634,
           21471864-21472234,21472327-21472430,21473086-21473325
          Length = 422

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 443 ERAHSPPYVKWLPEPIDINDVNTPPTLRYKF*GLKYSYNGCPTLLTETH 297
           E   + P +  L EPI +  VN     +Y+  G KY  +G PTL+   H
Sbjct: 80  ELDEAAPVLAGLSEPIIVAKVNAD---KYRKLGSKYGVDGFPTLMLFIH 125


>07_03_1693 -
           28756331-28756435,28756558-28756664,28757114-28757245,
           28757412-28757478,28757553-28757635,28757824-28757905,
           28763101-28763177,28763278-28763361,28763443-28763512,
           28763625-28763713,28763801-28764487,28765700-28765997
          Length = 626

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 178 GRFCEELLLLGLVFITGGRTSCESARVG 261
           GR CE  +  G+ F+  G T CE++ VG
Sbjct: 440 GRVCECPIARGVKFVGDGYTHCEASGVG 467


>03_05_0324 - 23121401-23121465,23121507-23122059
          Length = 205

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = -2

Query: 266 VVPTRADSQEVLPPV-------MNTSPNKS-NSSQNLPPDRNHDPAR 150
           VV T  DS    PP          + P K  N++++ PPD+ H+P R
Sbjct: 96  VVTTPVDSMSKDPPAEAENGTSTTSGPEKDPNAAKSCPPDKKHEPTR 142


>12_02_0848 + 23636478-23638058
          Length = 526

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 269 VVVPT-RADSQEVLPPVMNTSPNKSNSSQNLPPDRNHDPAR 150
           V +P  RA      PP+++ SP   ++S   PP R   PAR
Sbjct: 53  VTLPVQRAGDTPPPPPIIDASPPPPSTSPPPPPPRRGRPAR 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,981,369
Number of Sequences: 37544
Number of extensions: 281958
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)