Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1002
         (522 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32098| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)                  28   4.1  
SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)                   28   5.4  
SB_47405| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_46308| Best HMM Match : IMS (HMM E-Value=0)                         27   9.4  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_32098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 411 PLNIRWAVSSFTHLSIIKKKKKNSRGGPVP 500
           P  +RW +++ T LS++ + + +    PVP
Sbjct: 24  PWGLRWDLATLTFLSVMSRNRSSRNDAPVP 53


>SB_26671| Best HMM Match : zf-TRAF (HMM E-Value=0.54)
          Length = 901

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 248 DSQEVLPPVMNTSPNKSNSSQNLPPDRNHDPARNSVD 138
           DSQ    P  + S N+S+S  N+P D +H+  R+ +D
Sbjct: 862 DSQSSSEPA-SQSQNRSSSPVNIPDDGDHESQRSWLD 897


>SB_46519| Best HMM Match : DUF720 (HMM E-Value=0.49)
          Length = 1205

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 233  LPPVMNTSPNKSNSSQNLPPDRNHDPARNSVDCVYGL 123
            LPP      N+ NS+ +LP     +PA  + D   GL
Sbjct: 1054 LPPPEEKHANEGNSTTSLPTSLTPEPATRTTDSSTGL 1090


>SB_47405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 151 LAGS*LRSGGRFCEELLLLGLVFITGGRTSCESARVG 261
           + G  L  GG +  E L+LG   I G R   ESA +G
Sbjct: 56  ILGKCLSGGGAYSGEALILGNALIRGRRLLRESAYLG 92


>SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 8   ETCLVGFSGFTLGAFRTLKHRSPFSSNWLITT 103
           +TC+  F    +G F +++HRSP S+     T
Sbjct: 15  DTCVCDFRTREIGIFPSIRHRSPASTKLFFFT 46


>SB_46308| Best HMM Match : IMS (HMM E-Value=0)
          Length = 1245

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 275 VRVVVPTRADSQEVLPPVMNTSPNKSNSSQNLPPDRNHD---PARNSVD 138
           +R +  TR  + E  PP  N  P +SNS   +    N D   P+R S++
Sbjct: 525 IRCLESTRIAAGENFPPTSNEPPTESNSKHVIVSTLNTDQNGPSRMSLN 573


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 254  RADSQEVLPPVMNTSPNKSNSSQNLP 177
            +A ++E + PVMN  P + N  +NLP
Sbjct: 1504 QAVAKEGVDPVMNACPVRDNEKKNLP 1529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,584,421
Number of Sequences: 59808
Number of extensions: 296760
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)