Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1002
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   3.5  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   3.5  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U46671-2|AAA85748.1|  205|Caenorhabditis elegans Hypothetical
           protein C14E2.3 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = -2

Query: 275 VRVVVPTRADSQEVLPPVMNTSPNKSNSSQNLPPDRNHDPARNSV 141
           +RV+VPTR     + PP     P K  S  NLP  R HDP   SV
Sbjct: 43  IRVIVPTR-----IAPP----PPIKEASCPNLPQIRIHDPLVFSV 78


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 512 IGRIGYRAPPRVFFFFFY 459
           IG  G+ APP VF FFF+
Sbjct: 348 IGAFGHEAPPLVFKFFFW 365


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 512 IGRIGYRAPPRVFFFFFY 459
           IG  G+ APP VF FFF+
Sbjct: 346 IGAFGHEAPPLVFKFFFW 363


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 227  PVMNTSPNKSNSSQNLPPDRNHDPARNS 144
            PVM + P  S S++ LPPD    P++ S
Sbjct: 1129 PVMASVPTTSGSARQLPPDSYQKPSQIS 1156


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 118 ARSTLRRNQPVRRER*PVLEGPK 50
           +R+T RRN+PVR E   ++ GP+
Sbjct: 195 SRTTARRNEPVRNENPLMIGGPR 217


>U00063-3|AAK18959.2|  446|Caenorhabditis elegans Hypothetical
           protein F56C9.3 protein.
          Length = 446

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 324 TVVTILKTLELISQGGWRIYVVDVYGLR*PLNIRW 428
           +V+  + +++LI     RI+   VYG++ P+N+ W
Sbjct: 211 SVIMGMASVQLIISSVRRIHDAAVYGIKDPINVSW 245


>U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical
           protein F46F11.6 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 333 LQRLPHPSNRNALLI*GRNSQGGSTYP 253
           L RLP P  +N +L+   NSQ  ST P
Sbjct: 28  LTRLPFPDKQNMMLVSWENSQICSTLP 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,222,607
Number of Sequences: 27780
Number of extensions: 215381
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)