Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1000
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666     50   2e-06
03_06_0479 + 34217170-34217172,34217337-34217786                       49   3e-06
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203...    48   7e-06
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393     42   5e-04
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318     41   6e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    41   8e-04
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378     39   0.003
05_01_0103 + 686770-687017,687120-687270                               38   0.006
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084     35   0.052
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    29   2.6  

>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
          Length = 145

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +2

Query: 401 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 565
           +SG+ V+  CK T+ E+++ K HRYV+F I D+ K++ VE  G     ++ F++ L
Sbjct: 11  SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66


>03_06_0479 + 34217170-34217172,34217337-34217786
          Length = 150

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
 Frame = +2

Query: 404 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 565
           SGV VS+ CK  ++E++  + HR+VVF I D  +Q+ V+ VG R+A +++    L
Sbjct: 6   SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASL 60


>03_06_0480 +
           34218403-34218405,34219071-34219127,34220047-34220312,
           34220402-34220552
          Length = 158

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +2

Query: 401 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 565
           +SGV + D CK  + E++  + HR++ F + ++ K+I V+ +G+R   YE F   L
Sbjct: 24  SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSL 79


>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
          Length = 158

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +2

Query: 401 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 553
           ASG+ V D CK  + E+K  +  R++VF I ++ +Q+ V+ +G+    Y+ F
Sbjct: 24  ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75


>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
          Length = 145

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 407 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 565
           G+ V+D CK  ++E+K  +  R++VF I D+  +I VE +G+    YE F   L
Sbjct: 13  GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATL 66


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +2

Query: 401 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 553
           ASG+ V D CK  ++E+K  +  R++ F I +  +Q+ V+ +G+    Y+ F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320


>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
          Length = 153

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 410 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 565
           + V +  K+ + E+K+ K HRYV+F I D + +I VE  G     Y+ F   L
Sbjct: 20  IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASL 72


>05_01_0103 + 686770-687017,687120-687270
          Length = 132

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +2

Query: 410 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDL 565
           + V D CK  + E+K  + +R++++ I ++K+ + VE VGE    Y+ F   L
Sbjct: 1   MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 53


>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
          Length = 169

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 410 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 565
           + V +  K+ + E+ + K HRYV+F I D + +I VE  G     Y+ F   L
Sbjct: 40  IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92


>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 473 NDASCPS*SPRKWSCKRPKLSHQTPFFDVIHVKITPLTSPTPRQRQPE 330
           ++ S P  +P K    +PKL  ++P  +   + + P TSPT  Q  P+
Sbjct: 161 SEDSTPKETPPKAEETKPKLEEKSPKAEPPKMPLPPKTSPTEPQLPPK 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,525,313
Number of Sequences: 37544
Number of extensions: 197874
Number of successful extensions: 479
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)