Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1000
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       55   4e-08
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    55   4e-08
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       31   0.44 
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    31   0.44 
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    31   0.44 
Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    29   1.8  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +2

Query: 398 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQ 568
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMK 58


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
 Frame = +2

Query: 398 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQ 568
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMK 58


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 398 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 517
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 398 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 517
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 398 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 517
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 265 YFDACAYWLPSKRANQHSEQCRSGCRCRGVGEVSGVIFT 381
           +++ CAYW+  + ++Q    C   C CR    V+  + T
Sbjct: 119 HWECCAYWVSKRMSSQEHHTC-PNCNCRVKAHVAFSLVT 156


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 265 YFDACAYWLPSKRANQHSEQCRSGCRCRGVGEVSGVIFT 381
           +++ CAYW+  + ++Q    C   C CR    V+  + T
Sbjct: 33  HWECCAYWVSKRMSSQEHHTC-PNCNCRVKAHVAFSLVT 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,848,645
Number of Sequences: 27780
Number of extensions: 201932
Number of successful extensions: 584
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)