Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0999
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 30 0.27
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.48
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 29 0.84
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 28 1.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.6
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 27 3.4
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 3.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 4.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 4.5
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 26 5.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 5.9
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -3
Query: 223 TWDSSFSIISQTNMISRNIITDTIYMLIKKPIHNYTARLRHAVTGGHFND 74
TWD + +SQ +T T YM + IHNY A +T +FND
Sbjct: 23 TWDFLKTGVSQIFERLDEGMTITKYMELYTAIHNYCADASKTITVDNFND 72
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 637 PRPRVHLPRYFSAKYPPGTCVAAYPK*NPPKIKP 536
P P + P YPP C A Y NPP++ P
Sbjct: 200 PHPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAP 233
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 172 CARSYWFD*LWKTKSPKYKLTSCLDRRMLQQQEK 273
C + D + K + PK ++ LD RML Q+EK
Sbjct: 70 CDNHFVIDAITKVEKPKAPISPKLDLRMLNQEEK 103
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 220 WDSSFSIISQTNMIS-RNIITDTIYMLIKKP 131
WDSS +++T IS R+II D+IYMLI P
Sbjct: 156 WDSS---LNETVRISERSIIRDSIYMLIGYP 183
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -3
Query: 619 LPRYFSAKYPPGTCVAAYPK*NPP--KIKPCVVSFQLNMAYGFGISV 485
L +YF+A Y C + +P P I V+SF+ N Y F IS+
Sbjct: 802 LQQYFTAIYKFEGCGSVFPFVVDPFTTILDDVLSFEANKVYSFAISL 848
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +2
Query: 278 FSHKASTIMLHHTPKIHSRSYGANGGL*CVHNEGLS*FSHYSDGK*NYNKRDACHRSIRM 457
F H A ++ P S SY A+GG+ + + ++ + D K NY + C +I
Sbjct: 47 FGHTAEVLVARFDP---SGSYFASGGM----DRQILLWNVFGDVK-NYGVLNGCKGAITD 98
Query: 458 LQWRR 472
LQW R
Sbjct: 99 LQWSR 103
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -3
Query: 172 NIITDTIYMLIKKPIHNYTARLRHAVTGGHFNDIVY 65
N + L+K H+Y R +H++ H N Y
Sbjct: 85 NAFMRAVNCLLKDDSHSYHVRFQHSINANHANQNYY 120
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = -3
Query: 88 GHFNDIVYQFFFIIIL--ISRAVIEXRE 11
GH ND+ YQ I +L ++RAV+ RE
Sbjct: 501 GHINDLGYQMSLIPLLPSLARAVLAARE 528
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 538 PCVVSFQLNMAYGFGISVSFPVTSPLEHAYGSMACVSFVIVLFT 407
PC++ + L Y G S+SF + M CV + L T
Sbjct: 806 PCLMGYSLFQYYRSGDSISFKHLFTMVFPTWDMICVMICVFLLT 849
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 544 IKPCVVSFQLNMAYGFGISV 485
I P +V F LN A GF ISV
Sbjct: 1111 IPPGLVGFSLNSAIGFNISV 1130
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 463 VATLLEMKLR-FQNRTPYLIGTKQRRA*F*VDFTLDMRRHRYLVDI*RKNTGVNGLLAWG 639
V LE+ + FQ R +++ K R + D+ L + ++ RKNT + +W
Sbjct: 378 VRAYLELDAKPFQGRLLHVLPAKARSSILLDDYALSKLPLKKQRELKRKNTAASSTFSWN 437
Query: 640 WLSTALFTFLTPFVTRL 690
L +T +RL
Sbjct: 438 SLYMNADAVVTSLASRL 454
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 275 IFSCCCNILLSKQLVSLYLGLFVFHN*SNQY 183
+FS CN+L K +V L +FH N+Y
Sbjct: 1109 LFSKLCNLLNDKNIVVRNQSLSLFHQLVNKY 1139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,670
Number of Sequences: 5004
Number of extensions: 66993
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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