Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0999
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)                 81   6e-16
SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)                 69   5e-12
SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)                 45   7e-05
SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)                 42   4e-04
SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   8e-04
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)            41   0.001
SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2)                       38   0.008
SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)                    38   0.008
SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.008
SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)                 31   1.2  
SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_21686| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_37350| Best HMM Match : MFS_1 (HMM E-Value=4.9e-07)
          Length = 349

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 49/125 (39%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
 Frame = +3

Query: 270 KDNFLTKRLRSCCIIPQRYILGVMGLMGVCNAYTMRVCLNLAITQMVNKTITNETHAIDP 449
           K   L  RL  CC    R +L +M   G    Y MR  L++A+  MVN+T  N       
Sbjct: 22  KPKSLCNRL-FCC----RNVLVLMQFAGFVTVYGMRANLSVALVAMVNQTYANSASGTRV 76

Query: 450 YACSSGDVTGNET-EIPKPYAIFNWNETTQGLILGGFYFGYAATQVPGGYLAEKYRGKWT 626
           Y        GN T +       F W++ TQGL+LG F++GY  TQ+PGG+LA  Y GK  
Sbjct: 77  YVPECRLDGGNHTVDHTLEDGPFKWDQDTQGLVLGAFFYGYLVTQLPGGWLAGHYGGKSV 136

Query: 627 LGLGV 641
            GLGV
Sbjct: 137 FGLGV 141


>SB_12290| Best HMM Match : MFS_1 (HMM E-Value=9.6e-16)
          Length = 432

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 43/110 (39%), Positives = 57/110 (51%)
 Frame = +3

Query: 312 IPQRYILGVMGLMGVCNAYTMRVCLNLAITQMVNKTITNETHAIDPYACSSGDVTGNETE 491
           IP+RY+L  M  +G  N Y+MRV LN+AI  MVN    ++               G    
Sbjct: 111 IPKRYVLLAMTWLGFINIYSMRVNLNVAIVGMVNDQTISK---------------GRLHF 155

Query: 492 IPKPYAIFNWNETTQGLILGGFYFGYAATQVPGGYLAEKYRGKWTLGLGV 641
           I K  A FNW+   QGL+LG F++GY   Q+PG +LA +  G    G GV
Sbjct: 156 IKK--AEFNWDSALQGLVLGSFFYGYWVLQIPGAWLAMRIGGTRVFGYGV 203


>SB_16303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +3

Query: 519 WNETTQGLILGGFYFGYAATQVPGGYLAEKYRGKWTLGLGVV 644
           W++   G ++  F++GY   Q+ GGYL++KY G+  LG   +
Sbjct: 56  WDKEADGAVMSAFFWGYTPAQIVGGYLSDKYGGEVVLGYAAI 97


>SB_17852| Best HMM Match : MFS_1 (HMM E-Value=0.00068)
          Length = 256

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +3

Query: 519 WNETTQGLILGGFYFGYAATQVPGGYLAEKY 611
           WN+   GL+L  F++GY  TQ+PGG+L++ Y
Sbjct: 68  WNKRESGLVLSSFFWGYLITQIPGGFLSDVY 98


>SB_31394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 540 LILGGFYFGYAATQVPGGYLAEKYRGKWTLGLGVVEHS 653
           +ILG FY+GY   Q+PGG+LA K  G    G G+   S
Sbjct: 2   IILGSFYYGYMVFQIPGGWLAMKLGGAKLFGFGIFSAS 39


>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
          Length = 473

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 34/100 (34%), Positives = 49/100 (49%)
 Frame = +3

Query: 309 IIPQRYILGVMGLMGVCNAYTMRVCLNLAITQMVNKTITNETHAIDPYACSSGDVTGNET 488
           +IP+RYIL  +   G    Y +RV LN+AI  MV      + H +         V G   
Sbjct: 10  LIPKRYILACLIFWGFFTMYALRVNLNVAIGAMV------KPHVVM--------VEGRA- 54

Query: 489 EIPKPYAIFNWNETTQGLILGGFYFGYAATQVPGGYLAEK 608
            + K   +       +G++LG FY+GY A Q+ GG+LA K
Sbjct: 55  -VIKVSVLV----AVEGVVLGSFYYGYVALQLLGGWLAIK 89


>SB_51537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 540 LILGGFYFGYAATQVPGGYLAEKYRGKWTLGLGVV 644
           L+LG FY+GYA  Q+P G+   K  GK   G G++
Sbjct: 2   LVLGSFYYGYAVLQIPAGWAVLKIGGKPIFGFGIL 36


>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
          Length = 676

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +3

Query: 315 PQRYILGVMGLMGVCNAYTMRVCLNLAITQMVNKTITN 428
           P+RY+L +M  +G  N Y +RV LN+A+  MVN    N
Sbjct: 324 PKRYVLAIMTFLGFMNMYALRVNLNVALGAMVNNHTVN 361


>SB_53973| Best HMM Match : TP2 (HMM E-Value=8.2)
          Length = 185

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 315 PQRYILGVMGLMGVCNAYTMRVCLNLAITQMVN-KTITNETHAI 443
           P+RYI+ +M  +G+C  Y +RV L++AI  M N  T+T     I
Sbjct: 33  PKRYIVAIMVFLGICVQYALRVNLSVAIGAMCNPHTVTENGFTI 76


>SB_32467| Best HMM Match : MFS_1 (HMM E-Value=0.41)
          Length = 366

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +3

Query: 258 AATRKDNFLTKRLRSCC------IIPQRYILGVMGLMGVCNAYTMRVCLNLAITQMVN 413
           A+ R    L+   +SCC      + P+RY++ V+ L+G  N Y MRV L++A+  MV+
Sbjct: 26  ASHRSAKPLSPSDQSCCDGKGFHMHPKRYLVAVLALLGFANVYGMRVNLSVALVAMVS 83


>SB_40774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 315 PQRYILGVMGLMGVCNAYTMRVCLNLAITQMVN-KTITNETHAI 443
           P+RYI+ +M  +G+C  Y +RV L++AI  M N  T+T     I
Sbjct: 33  PKRYIVAIMVFLGICVQYALRVNLSVAIGAMCNPHTVTENGFTI 76


>SB_39460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +3

Query: 315 PQRYILGVMGLMGVCNAYTMRVCLNLAITQMVN-KTITNETHAI 443
           P+RYI+ +M  +G+C  Y +RV L++AI  M N  T+T     I
Sbjct: 33  PKRYIVAIMVFLGICVQYALRVNLSVAIGAMCNPHTVTENGFTI 76


>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
 Frame = +3

Query: 435  HAIDPYACSSGDVTG--------NETEIP-KPYAIFNWNETTQGLILGGF-YFGYAATQV 584
            H  DPY+ S+ D T         N +++P  P  I+++N  ++   L G+ YFG  +T  
Sbjct: 2449 HCTDPYSMSTQDETNYNSRWRPFNTSDVPPSPSTIWSFNSASK---LNGYPYFGEISTYS 2505

Query: 585  PGGYL 599
             GGY+
Sbjct: 2506 GGGYI 2510


>SB_33520| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-09)
          Length = 317

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 522 NETTQGLILGGFYFGYAATQVPGGYLAEKYRGKWTLGLGV-VEHSAF 659
           N T   L++G   FG A   + G  L EKYR  W++  G+ V+ S F
Sbjct: 53  NLTVADLMVGLTLFGLALCSLAGPTLLEKYRYIWSVANGISVDGSLF 99


>SB_43984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 576 TQVPGGYLAEKYRGKWTLGLGVVEHSAF 659
           TQVPGG LA+++ G+  LG  ++  S F
Sbjct: 3   TQVPGGMLAQRFGGRVVLGSCMLFSSIF 30


>SB_21686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 798

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = +3

Query: 537 GLILGGFYFGYAATQV---PGGYLAEKYRGKWTLGLGV 641
           G+ +G FYFG A   +   PG     +Y+G+W   L V
Sbjct: 176 GIGVGLFYFGVAEPVLHYEPGSKWGNRYQGRWLFSLPV 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,949,008
Number of Sequences: 59808
Number of extensions: 527794
Number of successful extensions: 1243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)