Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0998
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 46 6e-06
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 35 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 35 0.011
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 34 0.014
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 34 0.019
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 34 0.019
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 32 0.075
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 31 0.099
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 31 0.13
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.17
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 31 0.17
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.23
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 30 0.23
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 30 0.23
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 30 0.30
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.30
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 29 0.40
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 29 0.40
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 0.53
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.53
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 29 0.53
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 0.70
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 0.93
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 0.93
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 28 0.93
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.2
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 1.6
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 27 1.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 2.1
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.8
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 2.8
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 3.7
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 4.9
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 26 4.9
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 6.5
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.6
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 8.6
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.6
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 8.6
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 25 8.6
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
TLRGH+A +Y W +DSR LVS+SQD L VW
Sbjct: 426 TLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVW 458
Score = 28.3 bits (60), Expect = 0.93
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 NLEPIGRIQMRTRR-TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
N I +++RT TL GH A I + WG + + S+S D + +W
Sbjct: 249 NTVRIWNVKLRTLLFTLSGHTAPITCVRWGGQNW-IYSSSYDKTIRIW 295
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH +++A+ W D + + S D + +W
Sbjct: 469 LPGHEDQVFAVDWSPDGQRVASGGADKAVRIW 500
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 35.1 bits (77), Expect = 0.008
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 313 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 492
Q + + +AI D T + T + I Q TLRGH ++ + W
Sbjct: 7 QHDDMIHDAILDYYGKRLATCSSDQTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66
Query: 493 N--LVSASQDGKLIVW 534
L SAS DG +IVW
Sbjct: 67 GTILASASYDGHVIVW 82
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
Q R R L GH +IY++ + D + LVS S D + +W
Sbjct: 365 QKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLW 403
Score = 28.3 bits (60), Expect = 0.93
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH +Y++ + D + LVS S D + +W
Sbjct: 454 LHGHEESVYSVAFSPDGKYLVSGSLDNTIKLW 485
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
D HT+NKV S W+MTCA++P
Sbjct: 49 DLHTSNKVAFFEAPSVWIMTCAFSP 73
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 415 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ ++ R L+ L KI + +D + L+SAS + L+VW
Sbjct: 9 VNIQGTRVLKNKLGKIPDIDISTDGKYLLSASTNDVLLVW 48
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 33.9 bits (74), Expect = 0.019
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 430 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
++ L GH + + W +D L+S S D +LIVW
Sbjct: 38 QKELTGHTGCVNTLDWSADGEFLLSGSDDTRLIVW 72
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 33.9 bits (74), Expect = 0.019
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R L GH I ++ W S R L++AS+D K I+W
Sbjct: 60 RVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILW 93
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 31.9 bits (69), Expect = 0.075
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -3
Query: 94 NITTLKQGYFTSFYHGTIHH*LFIHPQ 14
N TT+ + YF++F+ G IH LF +P+
Sbjct: 31 NNTTISKPYFSTFFEGGIHSLLFFYPK 57
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 31.5 bits (68), Expect = 0.099
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R+ R L GH I + W DS+ +VS D +IVW
Sbjct: 125 RSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +1
Query: 442 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
RGH I+++H D + + DG + +W
Sbjct: 15 RGHRLSIFSIHIHPDGSRIATGGLDGTIRIW 45
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -3
Query: 262 HVEQTIDNRAPRTYNTQRTDPSVSNVPS 179
+V + +N +P Y+ RT+P+V+N+PS
Sbjct: 384 NVSRNSNNNSPEGYDNNRTNPTVNNLPS 411
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 415 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ R TL GH I + W + S+ L SAS D + +W
Sbjct: 84 LTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIW 123
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 30.7 bits (66), Expect = 0.17
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
TL+GH +++ + W SD L S D + +W
Sbjct: 299 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 331
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.3 bits (65), Expect = 0.23
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH+ ++Y++ + +SA D K+ +W
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKIRIW 644
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
RTLRGH + + D +VSAS DG L VW
Sbjct: 571 RTLRGHTDSVREVACLGDL--IVSASYDGTLRVW 602
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGHLA + ++ + S + +V+AS D L W
Sbjct: 343 LRGHLASVNSVQYSSKTGLIVTASSDRTLRTW 374
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 30.3 bits (65), Expect = 0.23
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R +T+RGH IY++ + +S LVS D + W
Sbjct: 538 RRIKTMRGHRGNIYSLSFSRESTVLVSGGSDCTVRAW 574
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.30
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Frame = +1
Query: 367 DTSLAQATSNLEPIGRI-QMRTRRT---LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
D SL + N + IGRI +R+ ++ L H+ +I AM W + L ++S D + +W
Sbjct: 318 DGSLVSSGGN-DAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
Query: 535 GQPHDQQGARDPAALVLGDDLR 600
PA L D+R
Sbjct: 377 DLRKVSLAHTIPAHSSLVSDVR 398
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH+ + + W D R L+S S D +I+W
Sbjct: 251 LIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.40
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R L H ++ + W S+ L S D L+VW
Sbjct: 368 RVLTAHRQEVCGLEWNSNENLLASGGNDNALMVW 401
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 29.5 bits (63), Expect = 0.40
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVW 534
TL GH ++Y + W D L S+S D ++ +W
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIW 353
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.1 bits (62), Expect = 0.53
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH ++A+ + + L SA DG + +W
Sbjct: 463 LQGHTNTVWALAFSPNGNTLASADNDGNVFLW 494
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/39 (23%), Positives = 18/39 (46%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQ 555
L GH ++ + W + L + S+D + +W D +
Sbjct: 374 LEGHENEVKCIAWSCNGNYLATCSRDKSVWIWEATEDDE 412
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH A I+A+ + L+SA +GK+ +W
Sbjct: 225 LRGHAAWIFAVAFNPVGDLLLSADVEGKIKIW 256
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.53
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 370 TSLAQATSNLEPIGRIQMRTRRTLRG----HLAKIYAMHWGSDSR-NLVSASQDGKLIVW 534
TS TS + + Q TR RG H + +++ +DS NLVS S+DG +I W
Sbjct: 197 TSSGDQTSKVFDLSTQQCITRLGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDGSIIFW 256
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 427 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARD 567
+ +T H + + W SD+R L S D ++ VW + R+
Sbjct: 238 SNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE 284
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 442 RGHLAKIYAMHWGS-DSRNLVSASQDGKLIVWGQPHD 549
RGH A + W + L S D K+++W P D
Sbjct: 78 RGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPED 114
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+TL GH I + + S +VSA+ DG + VW
Sbjct: 543 QTLEGHTGAILKLIYISQGTQVVSAAADGLVKVW 576
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH ++A + SR L S S D + +W
Sbjct: 503 LRGHRRGVWACSFNPFSRQLASGSGDRTIRIW 534
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/38 (36%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = -2
Query: 371 VSHAAFLASLIAFLRVSASWRRLSSSFM--INTRVTHS 264
++HA L+S++ +L+VS RR+++ + IN R+T S
Sbjct: 1120 INHADILSSILDYLQVSKDKRRMATHILGQINQRLTLS 1157
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH +Y++ + DS L+S S D + VW
Sbjct: 480 LEGHKESVYSIAFSPDSSILLSGSLDKTIKVW 511
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ R GH IY++ + + R +VS S D +W
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLW 429
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQD 516
R GH I ++ W +DSR +S S+D
Sbjct: 140 REYTGHFDDIVSISWSADSRFFISTSKD 167
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 388 TSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
T+ L + I+ L GH + + + D + + + S+DG L VW
Sbjct: 169 TARLHSVDPIEGFHPCALTGHKNTVVSGFFSKDQQTIYTVSKDGALFVW 217
Score = 27.5 bits (58), Expect = 1.6
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = +1
Query: 442 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ H + + + SD + +++ + DGK+ VW
Sbjct: 336 QSHYDALSTLQYSSDGQRIITGADDGKIKVW 366
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
TL GH + + M + L S S D +IVW
Sbjct: 99 TLNGHKSAVTTMDFDKMGTRLASGSMDTDIIVW 131
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWG 537
L GH + +M DS+ LV+ S D + +WG
Sbjct: 572 LYGHKLPVLSMDISYDSKLLVTCSADKNVKIWG 604
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
T GH + A+ + D + L ++S+DG + VW
Sbjct: 78 TFEGHTNNVTAIAFHCDGKWLATSSEDGTVKVW 110
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH +IY++ + + +S S D + VW
Sbjct: 543 LRGHSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 358 AACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLV 501
AACDT + A +E +G + ++ ++L+G +++A +G DS +V
Sbjct: 376 AACDTFRSGA---IEQLG-VHVKNLQSLKGSSIELFAQGYGKDSSFVV 419
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQG 558
L GH + ++ W ++S+S D +IVW +P G
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVW-EPDTNTG 302
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH + + + SD R L S S+D L +W
Sbjct: 190 LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLW 221
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 445 GHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
GH + + ++ D+R +VS S+D + +W
Sbjct: 103 GHTSDVLSVSISPDNRQVVSGSRDKTIKIW 132
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L H + + W + L+S Q+G L++W
Sbjct: 258 LHWHANPLNGLSWALNGEYLLSGGQEGVLVLW 289
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 601 GAGHHPGRAQRDRVHLVGRVAVPTRSAYHPDW 506
G GH+P +A R ++ + Y PDW
Sbjct: 775 GVGHYPSKASEGRDRASIQLCEKLTNDYLPDW 806
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 162 FSGDFYITIKIG*PLFGTFCIFSISPH*NK-DISQVFITEQSTISF 28
FSG ++ +K+G PLF + + N +I+Q F+ Q+ +F
Sbjct: 308 FSGTVFMRVKVGIPLFERLKVGTNKVKNNSVNIAQSFLEPQTRSTF 353
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 125 NHFLAHFVSFQYHHTKTRIFHKF-LSRNNPP 36
N + H ++ Y +TRIFH+ L+ ++PP
Sbjct: 372 NRGVTHCITGAYRDDQTRIFHQCNLAASHPP 402
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 439 LRGHLAKIYAMHW-GSDSRNLVSASQDGKLIVW 534
L GH ++ W D L+S+ +DG+ +VW
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVW 288
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 365 HAAFLASLIAFLRVSASWRRLSSSFMINTRV 273
H +S+IAF++ + WR L SS I V
Sbjct: 663 HDESSSSMIAFVKPNPVWRNLGSSLHIEKLV 693
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 440 CAVISRRSTPCTGAAIPGTWCRPVRMVS*SCGDSHTT 550
C RR CTG+ IPG C + C S T+
Sbjct: 16 CDRCRRRKIRCTGSDIPGQPCLACQKAHADCHFSTTS 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,917
Number of Sequences: 5004
Number of extensions: 50973
Number of successful extensions: 239
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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