Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0998
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 80 1e-15
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10) 45 6e-05
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 38 0.006
SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17) 38 0.006
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 35 0.045
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 35 0.060
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 34 0.079
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19) 33 0.18
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 32 0.32
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.56
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 31 0.74
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 31 0.97
SB_35708| Best HMM Match : WD40 (HMM E-Value=1.2) 31 0.97
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42) 31 0.97
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 30 1.3
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 30 1.3
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 30 1.3
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 30 1.7
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05) 30 1.7
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09) 29 2.2
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23) 29 2.2
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.0
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 29 3.0
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 29 3.0
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 29 3.9
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 29 3.9
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21) 29 3.9
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30) 28 5.2
SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08) 28 5.2
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 28 6.9
SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095) 28 6.9
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 27 9.1
SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037) 27 9.1
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 27 9.1
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 27 9.1
SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 27 9.1
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7) 27 9.1
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 27 9.1
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +1
Query: 289 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 468
M+EL+ LRQE+E LK IRDARK A DT+LAQ ++N++ +GRIQMRTRRTLRG L I +
Sbjct: 1 MSELEQLRQESEALKCQIRDARKIAADTTLAQVSANIDQVGRIQMRTRRTLRGGLDNICS 60
Query: 469 MH 474
++
Sbjct: 61 IY 62
>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
Length = 345
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +1
Query: 373 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQ--DGKLIVW 534
++ + LE + M+ RR L+GH K+ +M W D R+LVS+SQ D ++W
Sbjct: 199 TVKDVSRKLESLQGCHMKVRRILKGHQGKVLSMDWSGDCRHLVSSSQGCDRAALIW 254
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 313 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 492
Q +E+L +RDA + C SL + + L P G + +TL GH +Y + +D
Sbjct: 1017 QLSESLAGLLRDALQP-CVPSLVPSRAFLTPPGG---QLTQTLVGHSKGVYGLAVTADGS 1072
Query: 493 NLVSASQDGKLIVW 534
+VS S+DG + VW
Sbjct: 1073 CVVSGSEDGSVKVW 1086
>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
Length = 289
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
Q T L+GH++K+ A+ + + S+ L+S +DG ++VW
Sbjct: 119 QQGTAFELQGHISKVQALCFAAHSKKLISCGEDGAIMVW 157
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ LRGH+ +Y + W D L+S S D I+W
Sbjct: 174 KMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIW 207
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 35.1 bits (77), Expect = 0.045
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 412 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R + R L GH ++ + W D ++L S D KL+VW
Sbjct: 133 RSPTQLERRLVGHRQEVCGLKWSPDHQHLASGGNDNKLLVW 173
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 34.7 bits (76), Expect = 0.060
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+LRGH+ +Y + W +D R + S S D L VW
Sbjct: 96 SLRGHVNCVYQIAWSADCRLICSGSADSTLKVW 128
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 34.3 bits (75), Expect = 0.079
Identities = 16/48 (33%), Positives = 29/48 (60%)
Frame = +1
Query: 391 SNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+N++ +++ + TL+GH + I+A+ D +VSAS+D L VW
Sbjct: 442 NNIKVWDLVRLECQATLKGHTSLIWAIAVSRDDSVIVSASKDDLLKVW 489
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R LRGH + A+ +D R+LVS S+D + +W
Sbjct: 665 RDGMVLRGHDKGVTALLIMNDCRHLVSGSKDSTIRLW 701
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 312 PGGGNP*KRY*RCEKSGMRHVAGPGHLEPGADRSHTDAHPTNLARSS 452
PGGG P R +RHV P HL G +S+TD + NL+ S
Sbjct: 1289 PGGGRPSPRPSSPRTGHVRHVTSPRHLS-GVSKSNTDYNLHNLSTGS 1334
>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
Length = 426
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQD 516
TLRGH +YA +GS+ + L+SAS+D
Sbjct: 345 TLRGHSGPVYATCFGSEGKILLSASED 371
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
TL GH +++++ W +D + L + S+D KL ++
Sbjct: 148 TLEGHNEQVFSLAWSADGKQLATFSRDKKLRIY 180
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+T + RGH + + + + +D+ +++SAS DG + +W
Sbjct: 340 KTLKEFRGHTSFVNDVIFTADAHHIISASSDGTIKIW 376
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDPAA 576
R L GH + + + D++ +VS + DGK+ VW D Q A DP A
Sbjct: 387 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW----DLQAALDPRA 428
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R++RGH I+ M + D L S DG + VW
Sbjct: 175 RSVRGHTDTIHTMSFSPDGTLLASGGMDGAVRVW 208
>SB_35708| Best HMM Match : WD40 (HMM E-Value=1.2)
Length = 179
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+TL GH + + W + L ++ Q G +IVW
Sbjct: 107 QTLEGHTGAVQVVTWNEQFQKLTTSDQYGLIIVW 140
>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
Length = 383
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQ 540
RTLRGH + + + D+R + S S D + +W +
Sbjct: 182 RTLRGHQGAVNVVAFSLDNRYIFSGSDDKSIRIWSR 217
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 433 RTLRGHLAKIY--AMHWGSDSRN--LVSASQDGKLIVWGQPHDQQGAR 564
RTL GH + A WG + L +AS+DG +I+W ++ AR
Sbjct: 87 RTLVGHEKPVTNCAFMWGPSLKTPILATASEDGDVILWHYDSGKRAAR 134
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH K+ + W D ++S DG + W
Sbjct: 270 LKGHNGKVRQVIWSQDDSKIISCGMDGAVYEW 301
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+L GH + + SD R LVSASQD L +W
Sbjct: 827 SLDGHDGHVRGIAITSDGRRLVSASQDRTLRIW 859
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDPAALV 582
TLRGH +Y + D + +S S+D + +W D + A++ +LV
Sbjct: 869 TLRGHSETVYCVCCSPDDKFAISGSEDTMVKIW----DLESAKEVRSLV 913
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 394 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
NL P R + +L+ H + A+ + + R LVSA+QD I W
Sbjct: 1070 NLAPFSR-----KLSLKEHEYPVQALAFAEEGRCLVSAAQDNCFIAW 1111
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 277 RVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQA--TSNLEPIGRIQMRTRRTLRGH 450
R+ I + DS Q A T N + D++KA T A T+++ ++ T+
Sbjct: 14 RIYIQHVSDS--QTARTYTNHMNDSQKARIYTQHAARIYTNHVNDSQTARIYTQHVNYSQ 71
Query: 451 LAKIYAMHWGSDSRNLVSASQDGKL 525
A+IY H NLV+ SQ ++
Sbjct: 72 TARIYTQHAARIYTNLVNDSQTARI 96
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH A + ++ + + R+L+S+ D +L+VW
Sbjct: 265 LSGHKAAVQSLAFSRNGRHLISSGVDTRLLVW 296
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +1
Query: 394 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
N P + R L GH ++A+ D++ L+S S+D + +W
Sbjct: 64 NRIPFPEMTASESRRLVGHSGPVFAVSIDHDNKFLLSCSEDKTIRLW 110
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 345 RCEKSGMRHVAGPGHLEPGA 404
RCE SG H A P H PGA
Sbjct: 489 RCELSGATHFAFPAHFTPGA 508
>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
Length = 168
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 345 RCEKSGMRHVAGPGHLEPGA 404
RCE SG H A P H PGA
Sbjct: 70 RCELSGATHFAFPAHFTPGA 89
>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
Length = 743
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 448 HLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQG 558
H A I + W S LV+ +DG ++ W DQ+G
Sbjct: 82 HKAAIKTIEWNSSGNKLVTGDEDGTVVGW--KADQKG 116
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R+L GH ++ ++ + + + LVS + D KL VW
Sbjct: 1258 RSLEGHEDRVTSLAFSKNGKRLVSVALDKKLKVW 1291
>SB_20382| Best HMM Match : WD40 (HMM E-Value=1.7e-23)
Length = 437
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWG 537
+L GH + AM SDS +V+ S D + +WG
Sbjct: 241 SLYGHKLPVMAMDISSDSTLIVTGSADKNIKIWG 274
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
Q R TLR H + + W D L S S D + +W
Sbjct: 77 QWRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIW 115
>SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 205 RCVACCTCAARGCRSSVPRELCV 273
RC A C C GCR + RE V
Sbjct: 42 RCTAPCVCTQEGCRKTFVREAAV 64
>SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 460 IYAMHWGSDSRNLVSASQDGKLIVWGQP 543
+ +M W +DS N+++A QDG+ VW P
Sbjct: 2 VTSMAW-NDSTNMLAALQDGRFTVWYYP 28
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 245 RQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL--RLDNHFLAHF-VSFQYHHTKT 75
+Q R H Q A +S PF+ S DF + S + +L N ++ F + HH +
Sbjct: 572 KQKRPKHAQRAPMQSIQTTAPFELISLDFLHLEKSSVAEKLYNDYIMRFGFPLRIHHDQG 631
Query: 74 RIFHKFLSRNNPPLAFHTPSRS 9
+ F L ++ L+ SR+
Sbjct: 632 KEFENDLHKHLEKLSGVAHSRT 653
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 442 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ H IY + W DS+ +++AS D +W
Sbjct: 202 KAHSGGIYGLSWSDDSKFILTASGDKSCKIW 232
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Frame = +1
Query: 277 RVLIMNELDS-LRQEAETLKNAIRDARKAACDTSLAQA--TSNLEPIGRIQMRTRRTLRG 447
R+LI D L E E + + I + ++A + + + R TL G
Sbjct: 823 RLLIFQGQDGVLTAEGEAMDSKIHSVTFSPRGEAIAVGCESGTISVFNLQEARVMYTLAG 882
Query: 448 HLAKIY-AMHWGSDSRNLVSASQDGKLIVW 534
H K+ M + +D+R +++AS DG L VW
Sbjct: 883 HTNKLRRCMFFNNDTR-ILTASLDGSLKVW 911
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQ 555
T + H +Y + SDS +VS D + VW +Q
Sbjct: 505 TAKVHCGAVYCCKFSSDSSKVVSCGTDNHVKVWDSQSGRQ 544
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 442 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDPAAL 579
+GH +++ DS LVS S+D + +W D+ A+D A L
Sbjct: 757 KGHKGWAHSVGISKDSSKLVSGSEDETVKIW--TIDRDAAKDAAKL 800
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWG--QPHDQQGARDP 570
RTL+GH + + ++L +SAS+DG +++W +P + DP
Sbjct: 123 RTLKGHSDFVLGVDCSGTEKDLFLSASRDGSVVLWDTRKPRPAKRLADP 171
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWGQPHD 549
Q+ R TL+GH + + S+ ++S+S+D KLIVW D
Sbjct: 41 QLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWELTRD 85
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 427 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
T R GH + ++ + +D+R +VS ++D + +W
Sbjct: 134 TTRRFVGHTKDVLSVAFSADNRQIVSGARDHHIKLW 169
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 595 GHHPGRAQRDRVHLVGRVAVPTRSAYHPDW 506
GHHPG + +++ GR A+HP W
Sbjct: 43 GHHPG-GELPILYMAGRECTDVFKAFHPAW 71
>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
Length = 123
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWGQPHD 549
Q+ R TL+GH + + S+ ++S+S+D KLIVW D
Sbjct: 4 QLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWELTRD 48
>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
Length = 351
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 345 RCEKSGMRHVAGPGHLEPGA 404
+C+ +G H A PGHL PGA
Sbjct: 97 QCQLNGDTHFAFPGHLIPGA 116
>SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08)
Length = 175
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L GH A + + W D L S +G +IVW
Sbjct: 136 LLGHSAPVLDVCWNYDESLLASCDTEGTVIVW 167
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKL 525
TL GH I ++ + DS+ L++AS DG +
Sbjct: 143 TLEGHAMPIRSLTFSPDSQLLITASDDGHI 172
>SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 374 DVSHAAFLASLIAFLRVSASWRRLSSSFMINTRVTHSSRGTD--DRQPRAAHVQHATH 207
D +HA F + + + VSAS + + I+ R+ TD RQP A Q + H
Sbjct: 143 DATHAYFASVELGSVDVSASRNKSMINVTISNRLVKVKADTDLIQRQPTAPDAQDSKH 200
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH+ + A+ SD + +S S DG + +W
Sbjct: 207 LKGHMDNVKAVVIDSDGQQCLSGSSDGTVRLW 238
>SB_38000| Best HMM Match : fn3 (HMM E-Value=0.0095)
Length = 433
Score = 27.9 bits (59), Expect = 6.9
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Frame = +1
Query: 208 CVACCTCAARGCRSSVPRELCVTRVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQA 387
C+A C S E ++ SLR E E KN +
Sbjct: 10 CIAIIWCFGSFYFSGAALEPTQITSVVAISTTSLRVEWEPYKNTTGIIGYVVFFDDGSMT 69
Query: 388 TSNLEPIGRIQMRTRRTLRGHLAKI-YAMHWGSDSRNLVSASQDGKLIVWGQP 543
N+ +G + T + G ++ Y + S +R+ VS + DG+ VWG P
Sbjct: 70 YQNITVMGSVS--TAAVIDGLTMEVPYCIKMSSITRDGVSENWDGRDCVWGTP 120
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 445 GHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
GH + I + H + SR L+S D LI+W
Sbjct: 79 GHTSIITSCHPNTTSRKLISGGWDKTLIMW 108
>SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037)
Length = 303
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 259 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 149
VE+T+++R+P YN PS VP ID P + F
Sbjct: 6 VERTVEDRSPPPYNI----PS-GPVPEIDVPTLMPEF 37
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 239 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 105
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 913 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 956
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 184 GHC*QKDRCVACCTCAARGCRSSVPRELCVT-RVLIMNELDSLRQEAETLKNAIRDARKA 360
G+C +K C C + + RE V+ R + ++L+ L ++A+ L +I+D KA
Sbjct: 33 GNC-EKLTCRDCQLLEHKDHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKA 91
Query: 361 A 363
A
Sbjct: 92 A 92
>SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30)
Length = 685
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQP 543
TL H ++ + W D + L S D + +W P
Sbjct: 466 TLLNHSQEVCGLKWSPDGKLLASGGNDNVVNIWPYP 501
>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
Length = 286
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 239 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 105
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 105 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 148
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 184 GHC*QKDRCVACCTCAARGCRSSVPRELCVT-RVLIMNELDSLRQEAETLKNAIRDARKA 360
G+C +K C C + + RE V+ R + ++L+ L ++A+ L +I+D KA
Sbjct: 196 GNC-EKLTCRDCQLLEHKDHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKA 254
Query: 361 A 363
A
Sbjct: 255 A 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,595,170
Number of Sequences: 59808
Number of extensions: 458672
Number of successful extensions: 1661
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1661
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -