Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0998
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical pr... 144 6e-35
X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein. 144 6e-35
AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeri... 144 6e-35
Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical pr... 73 2e-13
AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeri... 73 2e-13
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 37 0.010
Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical p... 33 0.21
Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 32 0.28
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr... 32 0.28
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 32 0.28
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 32 0.28
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 32 0.28
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical p... 31 0.65
Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical p... 31 0.65
AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp (s... 31 0.65
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 30 1.1
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 30 1.1
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 30 1.5
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 30 1.5
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 30 1.5
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 30 1.5
AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical ... 30 1.5
AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore... 30 1.5
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 30 1.5
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 29 2.0
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 3.5
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 28 4.6
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 4.6
AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical... 28 4.6
AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical... 28 4.6
Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein. 28 6.0
Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical p... 27 8.0
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 27 8.0
>Z49127-9|CAA88948.1| 340|Caenorhabditis elegans Hypothetical
protein F13D12.7 protein.
Length = 340
Score = 144 bits (348), Expect = 6e-35
Identities = 69/82 (84%), Positives = 74/82 (90%)
Frame = +1
Query: 289 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 468
M+ELD LRQEAE LK+ IR+ARK+A DT+LA SNLEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60
Query: 469 MHWGSDSRNLVSASQDGKLIVW 534
MHW SDSRNLVSASQDGKLIVW
Sbjct: 61 MHWASDSRNLVSASQDGKLIVW 82
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
DS+TTNKVHAIPLRSSWVMTCAYAP
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCAYAP 107
>X17497-1|CAA35532.1| 340|Caenorhabditis elegans G-protein protein.
Length = 340
Score = 144 bits (348), Expect = 6e-35
Identities = 69/82 (84%), Positives = 74/82 (90%)
Frame = +1
Query: 289 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 468
M+ELD LRQEAE LK+ IR+ARK+A DT+LA SNLEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60
Query: 469 MHWGSDSRNLVSASQDGKLIVW 534
MHW SDSRNLVSASQDGKLIVW
Sbjct: 61 MHWASDSRNLVSASQDGKLIVW 82
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
DS+TTNKVHAIPLRSSWVMTCAYAP
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCAYAP 107
>AF291846-1|AAK55963.1| 340|Caenorhabditis elegans heterotrimeric G
protein beta subunit1 protein.
Length = 340
Score = 144 bits (348), Expect = 6e-35
Identities = 69/82 (84%), Positives = 74/82 (90%)
Frame = +1
Query: 289 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 468
M+ELD LRQEAE LK+ IR+ARK+A DT+LA SNLEPIGRIQMRTRRTLRGHLAKIYA
Sbjct: 1 MSELDQLRQEAEQLKSQIREARKSANDTTLATVASNLEPIGRIQMRTRRTLRGHLAKIYA 60
Query: 469 MHWGSDSRNLVSASQDGKLIVW 534
MHW SDSRNLVSASQDGKLIVW
Sbjct: 61 MHWASDSRNLVSASQDGKLIVW 82
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/25 (96%), Positives = 25/25 (100%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
DS+TTNKVHAIPLRSSWVMTCAYAP
Sbjct: 83 DSYTTNKVHAIPLRSSWVMTCAYAP 107
>Z71263-5|CAA95824.1| 356|Caenorhabditis elegans Hypothetical
protein F52A8.2 protein.
Length = 356
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 298 LDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHW 477
L+ L EAE L+ + R D + QA L+ +G + ++ RR L+GH+ K+ M W
Sbjct: 17 LEQLANEAEELRKKLDQERHKLNDIPIQQAAERLDVMGALGVKQRRILKGHVGKVLCMDW 76
Query: 478 GSDSRNLVSASQDGKLIVW 534
D R++VS+SQDGK+IVW
Sbjct: 77 SLDKRHIVSSSQDGKVIVW 95
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
D TTNK HA+ + ++WVM CA++P
Sbjct: 96 DGFTTNKEHALTMPTTWVMACAFSP 120
>AF291847-1|AAK55964.1| 356|Caenorhabditis elegans heterotrimeric G
protein beta subunit2 protein.
Length = 356
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/79 (40%), Positives = 48/79 (60%)
Frame = +1
Query: 298 LDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHW 477
L+ L EAE L+ + R D + QA L+ +G + ++ RR L+GH+ K+ M W
Sbjct: 17 LEQLANEAEELRKKLDQERHKLNDIPIQQAAERLDVMGALGVKQRRILKGHVGKVLCMDW 76
Query: 478 GSDSRNLVSASQDGKLIVW 534
D R++VS+SQDGK+IVW
Sbjct: 77 SLDKRHIVSSSQDGKVIVW 95
Score = 37.5 bits (83), Expect = 0.007
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 536 DSHTTNKVHAIPLRSSWVMTCAYAP 610
D TTNK HA+ + ++WVM CA++P
Sbjct: 96 DGFTTNKEHALTMPTTWVMACAFSP 120
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+LRGH+ +Y + W +DSR LVS S D L V+
Sbjct: 397 SLRGHVGPVYQVAWSADSRLLVSGSADSTLKVF 429
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 415 IQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+Q R L GH A + + WG + + S SQD + +W
Sbjct: 225 VQGTVVRCLSGHTASVTCLRWGGEGL-IYSGSQDRTVKMW 263
>Z37139-8|CAA85487.1| 376|Caenorhabditis elegans Hypothetical
protein C14B1.4 protein.
Length = 376
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 421 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
M RTL GH + + W SDSR +VSAS D L ++
Sbjct: 119 MICERTLTGHKLGVNDIAWSSDSRCVVSASDDKTLKIF 156
>Z73906-10|CAB54209.1| 530|Caenorhabditis elegans Hypothetical
protein D2030.9b protein.
Length = 530
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDP 570
R L+GH A + W +VS++ DG VW Q+G P
Sbjct: 437 RRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 482
>Z73906-9|CAA98121.1| 571|Caenorhabditis elegans Hypothetical
protein D2030.9a protein.
Length = 571
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDP 570
R L+GH A + W +VS++ DG VW Q+G P
Sbjct: 478 RRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHD 549
+TL+GH +Y + W + S D +I+W + H+
Sbjct: 54 QTLKGHKDLVYTVAWSHNGELFASGGADKLVILWNEKHE 92
>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
protein C54G7.4 protein.
Length = 1199
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQ 552
+ L GH A + W +++ L ++ G +IVWG ++Q
Sbjct: 63 QALEGHNATVMNATWNENNQKLTTSDTSGLIIVWGMFNEQ 102
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDPAAL 579
R L GH + + + D + +VS + DGK+ VW D Q A DP AL
Sbjct: 419 RVLEGHEELVRCIRF--DEKRIVSGAYDGKIKVW----DLQAALDPRAL 461
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 32.3 bits (70), Expect = 0.28
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHD 549
+TL+GH +Y + W + S D +I+W + H+
Sbjct: 54 QTLKGHKDLVYTVAWSHNGELFASGGADKLVILWNEKHE 92
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein.
Length = 665
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPHDQQGARDPAAL 579
R L GH + + + D + +VS + DGK+ VW D Q A DP AL
Sbjct: 419 RVLEGHEELVRCIRF--DEKRIVSGAYDGKIKVW----DLQAALDPRAL 461
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 406 IGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLI 528
I R+ +TL GH I W SDS+ +VS S D KL+
Sbjct: 133 IWRMDFVYEKTLMGHRLGINEFSWSSDSKLIVSCSDD-KLV 172
>Z71181-10|CAA94901.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 388 TSNLEPIGRIQMRT-RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+SN +P R TL GH I+++ + S + LVSAS D + +W
Sbjct: 444 SSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNSRLVSASSDSTVRLW 493
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 412 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+++ + TLR HL I AM + L +AS+DG + +W
Sbjct: 346 QVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKLW 386
>Z71177-11|CAA94873.2| 678|Caenorhabditis elegans Hypothetical
protein K07C5.8 protein.
Length = 678
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 388 TSNLEPIGRIQMRT-RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+SN +P R TL GH I+++ + S + LVSAS D + +W
Sbjct: 444 SSNGDPFDSYDPRVLTETLTGHTDAIWSVAYHSSNSRLVSASSDSTVRLW 493
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 412 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+++ + TLR HL I AM + L +AS+DG + +W
Sbjct: 346 QVKWNIKVTLRSHLDSIRAMQFHPVEPVLFTASEDGLIKLW 386
>AF039711-10|AAB96707.2| 567|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 17 protein.
Length = 567
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 412 RIQMRTRRTLRGHLAKIYAMH--WGSDSRNLVSASQDGKLIVW 534
+++ ++ RGH A YA + + D L+S DGKL +W
Sbjct: 481 KLRFSKKKAFRGHNAAGYACNIDFSPDQSFLISGDADGKLFIW 523
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = +1
Query: 367 DTSLAQATSNLEPIGRI-QMRTRRT---LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
D S+A T + GR+ MRT R L GH +I+++ W + +++ S D + VW
Sbjct: 349 DGSVA-LTGGHDCYGRVWDMRTGRCIMFLDGHTKEIHSVEWMPNGYEMITGSSDNSMKVW 407
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R L H ++ + W D + L S D +L+VW
Sbjct: 516 RKLTNHRQEVCGLKWSPDKQLLASGGNDNQLLVW 549
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
TL H + + WG+ + +VS SQD VW
Sbjct: 53 TLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVW 85
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/46 (23%), Positives = 30/46 (65%)
Frame = -1
Query: 189 MSLRSTLQRFSGDFYITIKIG*PLFGTFCIFSISPH*NKDISQVFI 52
++++S++ ++ F + I + +FGT C+ S++ + N+++S+ I
Sbjct: 142 LNIQSSVHKYLPHFTLCIILKDAVFGTACVLSLAKYLNEEVSEFCI 187
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 448 HLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
H AK+ + W D+ L + S D +IVW
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVW 563
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
++GH +++ W +D R L++AS D I+W
Sbjct: 283 MQGHDDWVHSTVWSNDGRVLLTASSDKTCIIW 314
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 448 HLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
H AK+ + W D+ L + S D +IVW
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVW 563
>AF000265-5|AAK68197.1| 331|Caenorhabditis elegans Hypothetical
protein C18E3.5 protein.
Length = 331
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 421 MRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
M L+GH +IY + SD L SA D ++ +W
Sbjct: 26 MAPTMVLQGHGGEIYTSQFSSDGSFLASAGYDQQIFLW 63
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH I + + +DS +LVSA D + VW
Sbjct: 75 LKGHKGAIMEVKFNADSSHLVSAGTDKTVRVW 106
>AC024214-18|AAF36083.1| 211|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform b protein.
Length = 211
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = +1
Query: 298 LDSLRQEAETL-KNAIRDA-------RKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHL 453
+ ++RQ +T ++AI DA R A C + + P G Q L GH
Sbjct: 1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNG--QSYPMAELVGHS 58
Query: 454 AKIYAMHWGSDSRN--LVSASQDGKLIVWGQPHDQQG 558
++ + W L SAS D K+I+W ++QQG
Sbjct: 59 GPVWKVSWAHPKYGGLLASASYDKKVIIW---NEQQG 92
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Frame = +1
Query: 298 LDSLRQEAETL-KNAIRDA-------RKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHL 453
+ ++RQ +T ++AI DA R A C + + P G Q L GH
Sbjct: 1 MTTVRQRIDTQHRDAIHDAQLNIYGSRLATCGSDRLVKIFEVRPNG--QSYPMAELVGHS 58
Query: 454 AKIYAMHWGSDSRN--LVSASQDGKLIVWGQPHDQQG 558
++ + W L SAS D K+I+W ++QQG
Sbjct: 59 GPVWKVSWAHPKYGGLLASASYDKKVIIW---NEQQG 92
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ +RGH + I + + + +++S S DG + VW
Sbjct: 343 KEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ +RGH + I + + + +++S S DG + VW
Sbjct: 343 KEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 445 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQPH 546
GH + A+ W +D VS S D +W H
Sbjct: 313 GHCRDVTALEWSADENMCVSGSSDRTAKIWDGRH 346
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH ++ + W + + L S S D ++I++
Sbjct: 129 LRGHSMEVLTVEWSPNGKYLASGSIDYRIIIY 160
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
LRGH ++ + W + + L S S D ++I++
Sbjct: 417 LRGHSMEVLTVEWSPNGKYLASGSIDYRIIIY 448
>AC006684-12|AAN60497.1| 528|Caenorhabditis elegans Hypothetical
protein T02H6.1b protein.
Length = 528
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ L GH I+++ + + NL SASQD + +W
Sbjct: 242 KDLSGHRGPIFSLTFQLKTNNLYSASQDRSVKMW 275
>AC006684-11|AAF39968.1| 550|Caenorhabditis elegans Hypothetical
protein T02H6.1a protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+ L GH I+++ + + NL SASQD + +W
Sbjct: 242 KDLSGHRGPIFSLTFQLKTNNLYSASQDRSVKMW 275
>Z99278-1|CAB16490.1| 793|Caenorhabditis elegans Hypothetical
protein Y53C12B.1 protein.
Length = 793
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWGQ-PHDQQGARD 567
++ H KI+++ + V+A DG+++VW ++Q A D
Sbjct: 602 SIDAHTDKIWSLSKNHNESEFVTAGTDGRIVVWKDVTEEKQKAED 646
>Z83016-1|CAB05407.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH ++ + + SD + VS S D +I+W
Sbjct: 87 LKGHKKEVTDVAFASDGKKFVSISGDRSVILW 118
>Z79757-3|CAC42307.1| 585|Caenorhabditis elegans Hypothetical
protein F55B12.3b protein.
Length = 585
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R RTL GH ++Y++ + S+ + S S D + VW
Sbjct: 407 RCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVW 443
>Z79757-2|CAB02129.2| 587|Caenorhabditis elegans Hypothetical
protein F55B12.3a protein.
Length = 587
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R RTL GH ++Y++ + S+ + S S D + VW
Sbjct: 409 RCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVW 445
>Z68314-8|CAA92666.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH ++ + + SD + VS S D +I+W
Sbjct: 87 LKGHKKEVTDVAFASDGKKFVSISGDRSVILW 118
>Z66561-2|CAA91460.1| 331|Caenorhabditis elegans Hypothetical
protein F08G12.2 protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 436 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
T++GH + + + +DS +LVS D + VW
Sbjct: 76 TIKGHSGAVMDLKFTTDSSSLVSCGTDKSVRVW 108
>Z54281-9|CAA91052.1| 451|Caenorhabditis elegans Hypothetical
protein F46C5.9 protein.
Length = 451
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 439 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
L+GH ++ + + SD + VS S D +I+W
Sbjct: 87 LKGHKKEVTDVAFASDGKKFVSISGDRSVILW 118
>AF020788-1|AAC47809.1| 587|Caenorhabditis elegans SEL-10 protein.
Length = 587
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 424 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
R RTL GH ++Y++ + S+ + S S D + VW
Sbjct: 409 RCIRTLTGHNNRVYSLLFESERSIVCSGSLDTSIRVW 445
>Z81097-15|CAB03172.1| 412|Caenorhabditis elegans Hypothetical
protein K07A1.11 protein.
Length = 412
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 418 QMRTRRTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVW 534
+ R + L+GH + Y M W + +L++A DG + W
Sbjct: 160 KFRPQLRLKGHEGEGYGMSWSNTREGHLLTAGDDGMICHW 199
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 433 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 534
+T +GH KI A+ D+ +SAS D + VW
Sbjct: 245 QTFKGHNKKINAVVLHPDNITAISASADSHIRVW 278
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,408
Number of Sequences: 27780
Number of extensions: 315471
Number of successful extensions: 1095
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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