Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0997
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    52   2e-09
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   2.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 52.4 bits (120), Expect = 2e-09
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = +2

Query: 5   DPRRRLGGGEGDAEELKRHSFFQNLNWDAVARREVPAPFVPQLSHAADTCNFADEFTRMP 184
           +P  RLG  +G   E+++H +F   NW+ +  R +  P +P++ +A DT NF DE+   P
Sbjct: 605 NPAERLGYQKGGISEIQKHKWFDGFNWEGLRARTLEPPIMPRVQNATDTTNF-DEY---P 660

Query: 185 PTDSP 199
           P   P
Sbjct: 661 PDSDP 665


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 255 RVYWCRRT*YRIRYGCRRPDRKPRSSKDGRP 347
           R +W +R   R   G R+P RK R  + GRP
Sbjct: 5   RDHWHKR---RATGGKRKPIRKKRKFELGRP 32


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 393 PCSATVRTRCVGSAFT 440
           P   TV + CVGSA+T
Sbjct: 183 PPVPTVTSACVGSAYT 198


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 116  PFVPQLSHAADTCNFADEFTRMPPTDSPAQAPKH 217
            P  PQ++  A T N      R  PTD+   AP H
Sbjct: 1367 PHSPQITLTATTTNSLTMKVRPHPTDN---APIH 1397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,536
Number of Sequences: 438
Number of extensions: 2990
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)