Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0990
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 35 0.061
09_01_0019 + 403078-404211 31 1.0
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117... 30 1.7
01_01_0356 - 2814175-2815401 30 1.7
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170... 30 2.3
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899... 29 4.0
12_02_0711 + 22404710-22404824,22405726-22406288,22406386-224065... 28 7.1
01_01_0644 - 4878742-4878758,4879134-4879231,4879913-4879935,488... 28 7.1
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 28 9.3
01_06_0964 + 33446750-33447868 28 9.3
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 35.1 bits (77), Expect = 0.061
Identities = 33/117 (28%), Positives = 45/117 (38%), Gaps = 2/117 (1%)
Frame = -2
Query: 540 SGPRAQPAGNGSSLCTCISTLPIATAVVAKSTTKLSPFLAGAAKAMGFVPNALVLDLVGT 361
S PR PAG L + LP +T A+ST S A AA+A D G
Sbjct: 24 SSPRRYPAGFSRGLSSVSFGLPRSTTTAARSTASPSAPSAAAAEATDAASAQAGSDGKGD 83
Query: 360 NIGEEFVNDSPMRPCFS-AFNAQYPAIPXXXXXLAATHPTPASCAFLIATSIQK-FP 196
IGEE P ++ + + P CA ++A ++QK FP
Sbjct: 84 GIGEEERVVLPTNESSDRLLRIRHTVLAFCCLPFLTSLPVINLCAHVMAMAVQKLFP 140
>09_01_0019 + 403078-404211
Length = 377
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 252 HPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVAFDRIS 91
H P+S A + AP AS PS+ + AA S N QG +A RI+
Sbjct: 44 HQPPSSSVSANAAAANAAAASAPSASAPSSSSAAASSDNAYTSFQGLLALARIT 97
>05_05_0103 -
22408832-22410041,22410500-22410628,22411600-22411703,
22411780-22411874,22412483-22412540,22412741-22412792,
22415399-22415532
Length = 593
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 536 PDGKTTTDAKLAFETAKLLPLGGAEE 613
P GK TTD+ +F+TA LL LG +E
Sbjct: 476 PIGKCTTDSPQSFKTAALLSLGPMDE 501
>01_01_0356 - 2814175-2815401
Length = 408
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2
Query: 272 NHYGMAGYWALKAEKQGLIGLSFT-NSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVV 448
N Y AG WA AE L+ S S+P V R L T+ +A A L V
Sbjct: 189 NSYSAAGGWAAPAEFLDLLRFSLAGRSTPSAVVHRGAAHWLCTDDVASATRGDRLYKLSV 248
Query: 449 DLATTAVAMGKVEI 490
++ A A +V +
Sbjct: 249 EVGVPAAATPRVSM 262
>04_01_0146 +
1701744-1701860,1702036-1702112,1702247-1702344,
1704073-1704228,1704671-1705290,1705397-1705458,
1705551-1705941,1706404-1706575,1706686-1707212
Length = 739
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +2
Query: 395 TNPIALAAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGW 526
T P L AK GD +++ + T + H P+P+ W
Sbjct: 127 TKPTGLLHDAKYGDGIIIGIIDTGIWPESASFSDHGLSPIPSKW 170
>04_04_0806 -
28186486-28186701,28187047-28187341,28189800-28189942,
28190041-28190095,28190181-28190223,28190411-28190486,
28190708-28190826,28190917-28191487
Length = 505
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/78 (35%), Positives = 37/78 (47%)
Frame = +2
Query: 308 AEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPAKNGDNLVVDLATTAVAMGKVE 487
A + G GLS SP+L P R+ SA+GT+ A P K ++ L A G
Sbjct: 40 AVEVGRFGLSHP-PSPLL-PHRAHASAIGTDEAEDANPGKEAAVYLL-LLEGADVRGIAR 96
Query: 488 IQVHKEEPLPAGWALGPD 541
+ EE PAG A+G D
Sbjct: 97 LP-SLEEGRPAGGAVGDD 113
>12_02_0711 +
22404710-22404824,22405726-22406288,22406386-22406547,
22406664-22407257
Length = 477
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 175 RRFRCYCRKLLYGCRDKEGAGSGSRMGGCQT*QSLRYGWILGIESGK 315
R R CR+L +GC D GA + S +G T ++ G I GI GK
Sbjct: 48 RLLRPRCRRLYHGCSD--GAAACSVVGERVTVLTIDGGGIRGIIPGK 92
>01_01_0644 -
4878742-4878758,4879134-4879231,4879913-4879935,
4880888-4880971,4882011-4882265,4883026-4883615,
4884154-4884331,4884484-4884675,4884792-4884872
Length = 505
Score = 28.3 bits (60), Expect = 7.1
Identities = 37/157 (23%), Positives = 58/157 (36%), Gaps = 3/157 (1%)
Frame = -2
Query: 594 GRSLAVSKANLASVVVFPSGPRAQPAGNGSSLCTC---ISTLPIATAVVAKSTTKLSPFL 424
G A + + + + V R + +G+GS T +S +TA A + L
Sbjct: 270 GGGAAATASAVTTAAVQQDQQRRRDSGSGSCSSTRDHEVSATSYSTAGYAVAAAVEMQHL 329
Query: 423 AGAAKAMGFVPNALVLDLVGTNIGEEFVNDSPMRPCFSAFNAQYPAIPXXXXXLAATHPT 244
AA F P + VG + + N A Q P P A T
Sbjct: 330 KHAADHFSFAPFRKSFEEVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLL----ATTTAV 385
Query: 243 PASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNI 133
PA+ AFLI+ + P A Q ++ + D F++
Sbjct: 386 PAT-AFLISRPTNPVSNIVPPAMQHASVVLDHDQFHV 421
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +2
Query: 446 VDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDAKLAFETAKLLPLGGAEETSGY 625
++L+TT+ + +V+KE P P L P +D + + ++ P+GG +ET
Sbjct: 632 MELSTTSQDQEEEGAEVNKERP-PL---LSPSRNNGSDGRRFLDLNEVAPVGGFDETQSR 687
Query: 626 KG 631
G
Sbjct: 688 NG 689
>01_06_0964 + 33446750-33447868
Length = 372
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -2
Query: 258 ATHPTPASCAFLIATSIQKFPTVAPKASQPSTRAVAADSFNITGFAQGSVA 106
A+ P PASC ++A ++ P P RA+ A S + A +VA
Sbjct: 54 ASSPDPASCQAIVADAVLASPHSHPSRPAHVLRAILATSLDRHDAAAEAVA 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,800,929
Number of Sequences: 37544
Number of extensions: 479157
Number of successful extensions: 1482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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