Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0990
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                      229   2e-60
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)             31   1.4  
SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_44141| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)                   28   9.5  
SB_23904| Best HMM Match : RdRP (HMM E-Value=0)                        28   9.5  

>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score =  229 bits (559), Expect = 2e-60
 Identities = 109/204 (53%), Positives = 148/204 (72%), Gaps = 1/204 (0%)
 Frame = +2

Query: 65  LNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAG 244
           LNRLE Y++DI    T    KP ++K++AATA VDG + LG  VGNFCMD+AI KA++ G
Sbjct: 77  LNRLEMYVHDIQEGTTVYTGKPTVVKQTAATAFVDGNNLLGPVVGNFCMDLAINKAKDVG 136

Query: 245 VGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPA 424
           V WV  + SNHYG+AG++ L+A ++GLIG+S TN+SP++VPTR +   LGTNPI++AAPA
Sbjct: 137 VSWVVCKGSNHYGIAGWYTLRALEEGLIGISVTNTSPLVVPTRGRGVTLGTNPISVAAPA 196

Query: 425 KNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTD-AKLAFETAKLLPLG 601
           +NGD+ V+D+AT+AVA+GK+E+   K+ P+P GW +   G  T D   +       LPLG
Sbjct: 197 QNGDSFVLDMATSAVALGKIEMNRRKDIPIPHGWGVDAKGLETLDPVDVLDRGGGQLPLG 256

Query: 602 GAEETSGYKGYTLSALVEVLCSGL 673
           G E TSGYKGY L+ +VEVL SG+
Sbjct: 257 GTELTSGYKGYGLAMMVEVL-SGI 279


>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
          Length = 504

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/42 (40%), Positives = 19/42 (45%)
 Frame = +1

Query: 70  QIGILYKRYPVKSNRSLCKAGDIERVGCDRSGGRLRRFRCYC 195
           +I ILY  Y   S RS+C    I    C RS    R  RC C
Sbjct: 279 RIKILYSNYGRTSGRSVCPHPSIRTTSC-RSAESQRLIRCAC 319


>SB_47668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 148 GCDRSGGRLRRFRCYCRKLLY--GCRD-KEGAGSGSRMGGCQT*QSLRYGWILGIESGKT 318
           G ++ G  L+ F+   R+L+Y   CR  K+G G G   GG      L  G  L  ++ +T
Sbjct: 94  GFEQQGKTLKHFQTKRRELVYILFCRPRKQGGGLGEGRGGPVFHLQLGEGRALPDKTSRT 153

Query: 319 GSH 327
           G H
Sbjct: 154 GVH 156


>SB_44141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 433 AVFSRSGQSYGICTQCTCF 377
           A+  RSG +YG+C+ C  F
Sbjct: 9   AILFRSGNAYGVCSSCRTF 27


>SB_28653| Best HMM Match : rve (HMM E-Value=8.4e-10)
          Length = 290

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 242 GVGWVAARRSNHYGMAGYWALKAE 313
           G GW A R+S H  +  YW ++ E
Sbjct: 47  GGGWPAYRKSTHPSIRQYWGIRDE 70


>SB_23904| Best HMM Match : RdRP (HMM E-Value=0)
          Length = 1511

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +2

Query: 413  AAPAKNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDAKLAFETAKLL 592
            A P  NG   +       ++ GK  I       +     L  +GKTT + ++A E  + L
Sbjct: 900  ALPLSNGKTTINPRRALPLSNGKTTINPRIATEIRRALPLS-NGKTTINPRIATEIRRAL 958

Query: 593  PLGGAEET 616
            PL   + T
Sbjct: 959  PLSNGKTT 966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,261,550
Number of Sequences: 59808
Number of extensions: 509915
Number of successful extensions: 1251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)