Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0990
(763 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-10|CAA88951.1| 400|Caenorhabditis elegans Hypothetical p... 239 1e-63
AL033535-3|CAA22133.1| 400|Caenorhabditis elegans Hypothetical ... 239 1e-63
Z96047-9|CAB09417.1| 372|Caenorhabditis elegans Hypothetical pr... 201 4e-52
Z81077-16|CAB03073.1| 372|Caenorhabditis elegans Hypothetical p... 201 4e-52
U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical pr... 31 1.2
>Z49127-10|CAA88951.1| 400|Caenorhabditis elegans Hypothetical
protein VF13D12L.3 protein.
Length = 400
Score = 239 bits (586), Expect = 1e-63
Identities = 109/200 (54%), Positives = 141/200 (70%)
Frame = +2
Query: 65 LNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAG 244
LNRL+ Y+ DI +P+ILKE A TA VDG + LG VGNFCMD+AI KA+ AG
Sbjct: 92 LNRLDMYVRDIEQNVCKGDGEPIILKEKAGTAWVDGNNLLGPVVGNFCMDLAIEKAKNAG 151
Query: 245 VGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPA 424
+GWV A+ SNHYG+AG++AL+A K+G++G+S TN+SPI PTRS ALGTNPI+LAAP
Sbjct: 152 IGWVVAKGSNHYGIAGWYALRAMKKGMLGMSMTNTSPISFPTRSAVPALGTNPISLAAPG 211
Query: 425 KNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDAKLAFETAKLLPLGG 604
D+ V+D+A+T VA+GKVE+ KE P+P W +G GK TTD LLPLGG
Sbjct: 212 TGDDSFVLDMASTTVAIGKVELAARKENPVPLSWGVGEGGKETTDPTKVLYGGGLLPLGG 271
Query: 605 AEETSGYKGYTLSALVEVLC 664
E + GYKGY LS+++E+ C
Sbjct: 272 VEVSGGYKGYGLSSMIEIFC 291
>AL033535-3|CAA22133.1| 400|Caenorhabditis elegans Hypothetical
protein VF13D12L.3 protein.
Length = 400
Score = 239 bits (586), Expect = 1e-63
Identities = 109/200 (54%), Positives = 141/200 (70%)
Frame = +2
Query: 65 LNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAG 244
LNRL+ Y+ DI +P+ILKE A TA VDG + LG VGNFCMD+AI KA+ AG
Sbjct: 92 LNRLDMYVRDIEQNVCKGDGEPIILKEKAGTAWVDGNNLLGPVVGNFCMDLAIEKAKNAG 151
Query: 245 VGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPA 424
+GWV A+ SNHYG+AG++AL+A K+G++G+S TN+SPI PTRS ALGTNPI+LAAP
Sbjct: 152 IGWVVAKGSNHYGIAGWYALRAMKKGMLGMSMTNTSPISFPTRSAVPALGTNPISLAAPG 211
Query: 425 KNGDNLVVDLATTAVAMGKVEIQVHKEEPLPAGWALGPDGKTTTDAKLAFETAKLLPLGG 604
D+ V+D+A+T VA+GKVE+ KE P+P W +G GK TTD LLPLGG
Sbjct: 212 TGDDSFVLDMASTTVAIGKVELAARKENPVPLSWGVGEGGKETTDPTKVLYGGGLLPLGG 271
Query: 605 AEETSGYKGYTLSALVEVLC 664
E + GYKGY LS+++E+ C
Sbjct: 272 VEVSGGYKGYGLSSMIEIFC 291
>Z96047-9|CAB09417.1| 372|Caenorhabditis elegans Hypothetical
protein F36A2.3 protein.
Length = 372
Score = 201 bits (491), Expect = 4e-52
Identities = 93/201 (46%), Positives = 132/201 (65%), Gaps = 1/201 (0%)
Frame = +2
Query: 65 LNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAG 244
+NRL Y++D++ K+T P +LK +TA VDG + LG VGNFCM +A+ KA+E G
Sbjct: 60 INRLHIYVHDLMMKSTAVTGTPQVLKSKGSTAWVDGNNLLGPVVGNFCMQLAVEKAKEFG 119
Query: 245 VGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPA 424
+GWV R SNH+G+AG++A A + GL+G++FTN+SP + PT S+ +LG+NPI +AAP
Sbjct: 120 IGWVVCRNSNHFGIAGWYADFACRNGLVGMAFTNTSPCVFPTGSREKSLGSNPICMAAPG 179
Query: 425 KNGDNLVVDLATTAVAMGKVEIQVHKEEP-LPAGWALGPDGKTTTDAKLAFETAKLLPLG 601
GD+ +D+A+T VA GK+E+ K E +P W +G T + K + L PLG
Sbjct: 180 MEGDSFFLDMASTTVAYGKIEVVDRKGETYIPGSWGADKNGDETHNPKEVLDGGGLQPLG 239
Query: 602 GAEETSGYKGYTLSALVEVLC 664
G+E T GYKG L +VEVLC
Sbjct: 240 GSEITGGYKGTGLCMMVEVLC 260
>Z81077-16|CAB03073.1| 372|Caenorhabditis elegans Hypothetical
protein F36A2.3 protein.
Length = 372
Score = 201 bits (491), Expect = 4e-52
Identities = 93/201 (46%), Positives = 132/201 (65%), Gaps = 1/201 (0%)
Frame = +2
Query: 65 LNRLEFYINDILSKATDPCAKPVILKESAATALVDGCDALGATVGNFCMDVAIRKAQEAG 244
+NRL Y++D++ K+T P +LK +TA VDG + LG VGNFCM +A+ KA+E G
Sbjct: 60 INRLHIYVHDLMMKSTAVTGTPQVLKSKGSTAWVDGNNLLGPVVGNFCMQLAVEKAKEFG 119
Query: 245 VGWVAARRSNHYGMAGYWALKAEKQGLIGLSFTNSSPILVPTRSKTSALGTNPIALAAPA 424
+GWV R SNH+G+AG++A A + GL+G++FTN+SP + PT S+ +LG+NPI +AAP
Sbjct: 120 IGWVVCRNSNHFGIAGWYADFACRNGLVGMAFTNTSPCVFPTGSREKSLGSNPICMAAPG 179
Query: 425 KNGDNLVVDLATTAVAMGKVEIQVHKEEP-LPAGWALGPDGKTTTDAKLAFETAKLLPLG 601
GD+ +D+A+T VA GK+E+ K E +P W +G T + K + L PLG
Sbjct: 180 MEGDSFFLDMASTTVAYGKIEVVDRKGETYIPGSWGADKNGDETHNPKEVLDGGGLQPLG 239
Query: 602 GAEETSGYKGYTLSALVEVLC 664
G+E T GYKG L +VEVLC
Sbjct: 240 GSEITGGYKGTGLCMMVEVLC 260
>U40945-5|AAS80344.1| 617|Caenorhabditis elegans Hypothetical
protein F10D7.5a protein.
Length = 617
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/78 (26%), Positives = 32/78 (41%)
Frame = -2
Query: 393 PNALVLDLVGTNIGEEFVNDSPMRPCFSAFNAQYPAIPXXXXXLAATHPTPASCAFLIAT 214
P L+LD+ G ++G E ++ S RP NA P I A +PA A +
Sbjct: 174 PMWLILDIYGNSVGVEIIDASEFRP---RRNAPPPPIIAVPPRPAPARTSPAITAIALTP 230
Query: 213 SIQKFPTVAPKASQPSTR 160
S ++A + R
Sbjct: 231 SSASESSMASRTDDSGKR 248
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,097
Number of Sequences: 27780
Number of extensions: 369417
Number of successful extensions: 1006
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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