Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0989
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.40 
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    24   8.6  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.7 bits (61), Expect = 0.40
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 170 FFFLEHCFAFYIFLILSK*KRNSIPLYKGCFIHQNRLKDYFA 45
           FFF  HC  F+I + +     N +P +  CF     L  +F+
Sbjct: 82  FFFFSHCRRFHIAIFIHPYDSNVVPFF--CFFFYFSLFSFFS 121


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 277 PSKTSVSQNLPPDRNLDSLRRSGEKISG 194
           P+K  + QN+P + N D L +  E  SG
Sbjct: 172 PNKVLLLQNIPQEVNADVLTQIFEAFSG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,226
Number of Sequences: 5004
Number of extensions: 29649
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)