Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0986
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55CU7 Cluster: Origin recognition complex subunit 2; n...    33   6.5  
UniRef50_Q55BP7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  
UniRef50_Q54HY9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q55CU7 Cluster: Origin recognition complex subunit 2; n=1;
           Dictyostelium discoideum AX4|Rep: Origin recognition
           complex subunit 2 - Dictyostelium discoideum AX4
          Length = 391

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +3

Query: 102 TKLTPKH----RKVIFSNNKINENNQNGATNEIFILRKLYRKFK 221
           +K+ PKH    +K+  S  K  EN +NGA N  F   K+Y   K
Sbjct: 50  SKIQPKHEKEKKKLFESYYKTRENEENGADNHCFKFNKIYTDLK 93


>UniRef50_Q55BP7 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 881

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 90  SNFTTKLTPKHRKVIFSN--NKINENNQNGATNEIFILRKL 206
           SN T +L  K   ++F N  NKI E N N + N I I  K+
Sbjct: 187 SNTTNELFQKRHNLVFGNLGNKITEQNNNNSNNNININNKI 227


>UniRef50_Q54HY9 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 446

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 84  IISNFTTKLTPKHRKV--IFSNNKINENNQNGATNEIFILRKLYRKFKRYGV*YN 242
           I  NF + L   ++ +  I SNN  N NN N   N I ILR  Y   K     YN
Sbjct: 131 IYKNFNSNLIENYKIISTILSNNDNNNNNINNNNNNIQILRDNYNSQKIISNYYN 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,627,851
Number of Sequences: 1657284
Number of extensions: 11225153
Number of successful extensions: 43236
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42126
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)