Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0986
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    28   1.1  
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    28   1.1  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    27   2.5  
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    27   2.5  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    26   4.4  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   7.7  
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg...    25   7.7  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   7.7  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 371 RCFFDIFASFSLRLYVKNTTVLPQKIGKNPIGSCSENNFKLTSVILNAVPFKFAIKFSQN 192
           R FF++     +R +V    V+P+K GK P     +    +T   L     +FA+K  Q 
Sbjct: 142 RRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQA 201

Query: 191 E 189
           E
Sbjct: 202 E 202


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 371 RCFFDIFASFSLRLYVKNTTVLPQKIGKNPIGSCSENNFKLTSVILNAVPFKFAIKFSQN 192
           R FF++     +R +V    V+P+K GK P     +    +T   L     +FA+K  Q 
Sbjct: 142 RRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQA 201

Query: 191 E 189
           E
Sbjct: 202 E 202


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 220 LNLR*SFRKM-KISFVAPF*LFSLILLFENITFRCFGVNFVVKFEIINKRTRQRVYVVPV 44
           L L  +F  + K SF   F +F L  + + I     G+N+V+ +E   K T     VV  
Sbjct: 555 LQLTVNFENLCKTSFNMYFPIFLLPRIEQCIDDSFDGINYVLSYEDYTKETEHERLVVTR 614

Query: 43  LRS 35
           LRS
Sbjct: 615 LRS 617


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 674 IKMIYWLNTYYLYVGITSTRVSMIP 600
           I+ + WLNTYY+ +  +S   S +P
Sbjct: 3   IEFVGWLNTYYVGIDQSSYEASKLP 27


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 335 RLYVKNTTVLPQKIGKNPIGSCSENNFKLTSVILNAVPFKF 213
           R+++  T V+ + +G  P    +EN  KLT ++  AV   F
Sbjct: 64  RIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLF 104


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 KRKRGKNVEKTPSQSGGDTVST 401
           KR RG     TP QSGG   ST
Sbjct: 681 KRNRGVGTSATPKQSGGRKGST 702


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 359 DIFASFSLRLYVKNTTVLPQKIGKNPIGSCSENNFKLTSV 240
           D F SF   L++  T   P+    + +  C E NF +  V
Sbjct: 213 DAFVSFIEDLFISTTYHKPETKHFSSVNVCKEENFAILEV 252


>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
           diacylglycerol ethanolaminesphotranferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 24  HYQLDRNTGTTYTRWRVRLFIISNF 98
           HY++D      Y  W + LF+  +F
Sbjct: 71  HYEMDAFPSWVYASWAIGLFLYQSF 95


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 202 NFIANLNGTAFNITLVSLKLFSEHDPIGFFPIFCGKTVVF 321
           +F  ++ GT   +   SL L S  D + + P+F    +VF
Sbjct: 69  SFSLSILGTLLFVIAESLYLISGSDELAYVPVFIFGVIVF 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,787
Number of Sequences: 5004
Number of extensions: 50555
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)