Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0986
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_1665| Best HMM Match : rve (HMM E-Value=3.1e-10)                    29   3.5  
SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   8.1  
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   8.1  

>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 84  IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLYR 212
           I   ++   TP+   +I +N     N +NGA N++  LR+L++
Sbjct: 476 IFPRYSMTKTPRGICLIINNMNYIGNRRNGANNDVNALRRLFK 518


>SB_1665| Best HMM Match : rve (HMM E-Value=3.1e-10)
          Length = 328

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 21  SHYQLDRNTGTTYTRWRVRLFIISNFTTKLTPKHRKVIFSNNKI 152
           S YQ D+  G  Y++W +  +++ + T++ T    +  F+ N I
Sbjct: 204 SRYQSDKGLGQKYSKW-IETYLMKSMTSQATIDKLRECFARNGI 246


>SB_51248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 337 REKEAKMSKKHLHNQAAIPLAPAVFK 414
           +E   K SK+HLH + A   +P VFK
Sbjct: 733 KEIPVKASKRHLHREEAFSESPNVFK 758


>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 548

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 350 ASFSLRLYVKNTTVLPQKIGKNPIGSCSENNFKLTSV 240
           A  ++R  + N  VL  ++    +G C ENNF+L SV
Sbjct: 383 APMNVRRSLLNVAVLDGRL--YAVGGCDENNFRLNSV 417


>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 570

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 350 ASFSLRLYVKNTTVLPQKIGKNPIGSCSENNFKLTSV 240
           A  ++R  + N  VL  ++    +G C ENNF+L SV
Sbjct: 383 APMNVRRSLLNVAVLDGRL--YAVGGCDENNFRLNSV 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,400,327
Number of Sequences: 59808
Number of extensions: 345092
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)