Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0986
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical ...    28   7.1  
U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -3

Query: 344 FSLRLYVKNTTVLPQKIGKNPIGSCSENNFK--LTSVI--LNAVPFKF 213
           FS  + +     +  KIGK PIG+ S+ N +  LTSVI  L+ V +KF
Sbjct: 637 FSFSITLSKFLPITDKIGKIPIGTRSKRNGQRILTSVIKELSIVLYKF 684


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = -3

Query: 344 FSLRLYVKNTTVLPQKIGKNPIGSCSENNFK--LTSVI--LNAVPFKF 213
           FS  + +     +  KIGK PIG+ S+ N +  LTSVI  L+ V +KF
Sbjct: 637 FSFSITLSKFLPITDKIGKIPIGTRSKRNGQRILTSVIKELSIVLYKF 684


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 290 KNPIGSCSENNFKLTSVILNAVPFKFAIKFSQNENLVCRSVLI-VFVDFIIRKYHFSMF 117
           +NP+GS S +      +++N + F F +   Q   L+  S+L+ V     I+K  F+ F
Sbjct: 41  ENPLGSWSNHQTVYVFLLINLIIFYFRMAHRQRRLLLVTSILLHVASTLEIKKKIFNCF 99


>AF000298-7|AAC48256.1|  239|Caenorhabditis elegans Hypothetical
           protein W03D2.2 protein.
          Length = 239

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 142 IIKSTKTIKTERQTRFSFCENFIANLNGTAFNITLVSLKLFSEHDPIGFFPIFCGKTVVF 321
           ++++ +T+K +    FSF  NF  N+ G A N+ L  +K     D        C K +++
Sbjct: 48  LLRAIETMKIKDLICFSFTSNFAKNIVG-ALNLKLYDIKCMMGGDAHHLLFNIC-KNIIY 105

Query: 322 FT 327
            T
Sbjct: 106 VT 107


>U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical
           protein F31A3.3 protein.
          Length = 170

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 135 FSNNKINENNQNGATNEIFILRKLYRK 215
           F+N K + NNQ  A N++ + + + RK
Sbjct: 15  FNNRKSSNNNQENAVNQMVVKKPIKRK 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,226,699
Number of Sequences: 27780
Number of extensions: 280524
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)