Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0986
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.3  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 84  IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLY 209
           IIS+ + K    H    ++NN  N N  N   N     +KLY
Sbjct: 314 IISSLSNKTI--HNNNNYNNNNYNNNYNNYNNNNYNNYKKLY 353


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 84  IISNFTTKLTPKHRKVIFSNNKINENNQNGATNEIFILRKLY 209
           IIS+ + K    +    ++ N  N NN N   N     +KLY
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 296 FSVVKPLYFLHRGEEKKRQKCRKNT 370
           F +V  L FL+ GE   ++ CRK +
Sbjct: 9   FILVITLIFLYFGEADIKKDCRKES 33


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 138 SNNKINENNQNGATN 182
           +NN  N NN NGA +
Sbjct: 242 NNNNNNNNNNNGAND 256


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 27  YQLDRNTGTTYTRWRVRLFIISNFTT 104
           +++ ++T    TR+ +R+F+IS   T
Sbjct: 63  FKIIKSTNEKITRYIIRMFLISQQKT 88


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 27  YQLDRNTGTTYTRWRVRLFIISNFTT 104
           +++ ++T    TR+ +R+F+IS   T
Sbjct: 46  FKIIKSTNEKITRYIIRMFLISQQKT 71


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 314 TVLPQKIGKNPIGSCSENNFKLTSVILNAVPFKFAIKFSQNEN 186
           T L + I KN    C E   + T+ ++ +  F   +    NEN
Sbjct: 160 TYLDKLIEKNEPIECRELTARFTTDVIGSCAFGIDMSSMTNEN 202


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 126 KVIFSNNKINENNQN 170
           K I +NN  N NN N
Sbjct: 88  KTIHNNNNYNNNNYN 102


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 126 KVIFSNNKINENNQN 170
           K I +NN  N NN N
Sbjct: 88  KTIHNNNNYNNNNYN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,169
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)