Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0985
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   5.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   5.3  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   5.3  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   5.3  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    25   7.0  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.0  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   7.0  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 382 SVSQELATPRESKSKKPHTPSWLPVMPN 465
           S +Q+++  +++ S K   P+ LP++PN
Sbjct: 115 SSNQDISNDQKAPSFKEQEPATLPILPN 142


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 445 WLPVMPNSSHLDAVPQATPISRSRVH 522
           W P   N+  + ++  ATPI   R+H
Sbjct: 684 WKPAQLNNDSISSMALATPIGAIRIH 709


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = +1

Query: 250 TNEERKRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKK 429
           T EE  RL+ NGL            K  EV+   +   D   AVS  +   + +  K K+
Sbjct: 133 TLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSLVAVSAEKTQLSEKVEKMKR 192


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 437 LHHGCQSCQTLLIWMLYPRLL 499
           LHH C      LIW+ +PR +
Sbjct: 217 LHHTCSVLIIFLIWLHHPRTI 237


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 6   TIYKFYPYQINITILEVNVIILSKERH 86
           T+Y  + Y I   +LE   II S++RH
Sbjct: 372 TLYSSFVYAILYLLLEAYPIIFSEKRH 398


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 367 KYKAVSVSQELATPRESKSKKPHTPSWLPVMP 462
           K  ++ + QEL+TP++    +P  PS  P+ P
Sbjct: 26  KDDSIVLEQELSTPKQVNQARPKFPS--PITP 55


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 176 SEPTQ*KSPPSSI*KLIGLSPYV 108
           S P + +SP + + K+IG SPYV
Sbjct: 348 SSPEKKESPATHLLKVIGSSPYV 370


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 415 SKSKKPHTPSWLPVMPNSSHLDAVPQATPIS 507
           SK K+   P   PV  +  H DA P+A PIS
Sbjct: 742 SKKKQTEIP---PVSSSPPHNDAPPKAKPIS 769


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 403 TPRESKSKKPHTPSWLPVMPNSSHLDAVPQATP 501
           +PR  + ++  +PS L +       D VP+ TP
Sbjct: 351 SPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTP 383


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 400 ATPRESKSKKPHTPSWLPVM 459
           ATP++S+ K+P+T S + V+
Sbjct: 24  ATPKQSQIKRPYTASTVAVL 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,009
Number of Sequences: 5004
Number of extensions: 42953
Number of successful extensions: 91
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)