Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0985
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 30 1.3
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 28 4.1
01_05_0027 - 17331888-17331968,17332236-17332806,17333190-173333... 28 5.4
12_01_0931 + 9245777-9245806,9245972-9246065,9246188-9246220,924... 27 7.1
02_02_0683 + 12935439-12935620,12935694-12935763,12935915-12935995 27 7.1
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 27 7.1
09_06_0146 + 21186889-21187178,21187321-21187435,21188595-211886... 27 9.4
04_04_1292 - 32413046-32413807,32413901-32413936,32414037-324141... 27 9.4
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202... 27 9.4
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 9.4
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 400 ATPRE-SKSKKPHTPSWLPVMPNSSHLDAVPQATP 501
A P + S++ +P PS L PN+S LD PQA P
Sbjct: 216 ANPTQASQATQPAAPSILSSGPNASPLDLFPQALP 250
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/57 (29%), Positives = 21/57 (36%)
Frame = -2
Query: 316 KLNWTAHEDQDRCQLIAYVLHW*GYAGTCQGTSCRVTHGTSAGNSRPLSQHNKSLLL 146
K W ++YV W G CR T T SR L+Q + SL L
Sbjct: 283 KKEWVESTGVSDGDFVSYVNEWCKDGAVLIGGCCRTTPNTIKAISRSLNQRHSSLHL 339
>01_05_0027 -
17331888-17331968,17332236-17332806,17333190-17333335,
17333412-17333459
Length = 281
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 421 SKKPHTPSWLPVMPNSSHLDAVPQATPISRSRV 519
SK+P TP PV P+ + P P+S SRV
Sbjct: 51 SKQPRTPGGQPVGPSRQRMPTAPLLRPLS-SRV 82
>12_01_0931 +
9245777-9245806,9245972-9246065,9246188-9246220,
9246393-9246539,9248002-9248132,9248289-9248426,
9248570-9248668,9249020-9249238
Length = 296
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 346 IIEGNDDKYKAVSVSQELATPRESKSK 426
I+ G DD SVS+EL T +SK K
Sbjct: 231 IVHGGDDAVTDPSVSEELYTSAQSKDK 257
>02_02_0683 + 12935439-12935620,12935694-12935763,12935915-12935995
Length = 110
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +1
Query: 121 KPISFQIEEGGDFYCVGSEVGNYLRLFRGSLYKKYPGMCRRTLTNEERKRLIDNG 285
+P S ++ +C S + N+L++ G ++K Y T+ E R + + G
Sbjct: 29 EPCSLKVSSESATFCATSTL-NHLKVLTGKMFKSYNFNDESTIDGEARDYITNGG 82
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 379 VSVSQELATPRESKSKKPHTPSWLPVMPNSSHLDAVPQATPISRSRVHNK 528
+S +Q L + R++ S P + + PNSS + + QATP + S +H+K
Sbjct: 534 LSDNQGLCSSRKNNSCIAIMPKPIVLNPNSS-TNPLSQATPTAPSSMHHK 582
>09_06_0146 +
21186889-21187178,21187321-21187435,21188595-21188686,
21188839-21188952,21189139-21189193,21189348-21189458,
21190226-21190279,21190362-21190537,21190623-21190730,
21191332-21191405,21191500-21191675,21192169-21192264,
21192534-21192614,21192713-21192766,21193246-21193380,
21193453-21193533
Length = 603
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/87 (21%), Positives = 41/87 (47%)
Frame = +1
Query: 265 KRLIDNGLGPHXXXXXXXXXKASEVEDIIEGNDDKYKAVSVSQELATPRESKSKKPHTPS 444
KRL++ P +A +V I++GN + + +E+A+ ++ + H P
Sbjct: 114 KRLLEQAKDP--AQRPAFAVRAVQVSPILDGNQTDADSNTAGEEVASRLLNRQQSIHPP- 170
Query: 445 WLPVMPNSSHLDAVPQATPISRSRVHN 525
P +S++L+A+ S+ + H+
Sbjct: 171 --PAFGSSTNLEALALEASKSQGQDHD 195
>04_04_1292 -
32413046-32413807,32413901-32413936,32414037-32414179,
32414263-32414419,32414518-32414679,32414860-32415107,
32415589-32415733
Length = 550
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 331 SEVEDIIEGNDDKYKAVSVSQELATPR-ESKSKKPHTPSWLPVMPNSSHLDAVPQATPIS 507
SE+++ ++ + + + V +LA E + PV+P+S HL +V P+S
Sbjct: 276 SELKEALQEQESELEKVRTQLQLAEAMVEEAADMQRKLKNEPVIPSSKHLSSVEPGKPLS 335
Query: 508 RSRVHNK 528
+ ++
Sbjct: 336 NGQAKDQ 342
>02_05_0140 -
26218828-26219759,26219885-26220002,26220089-26220278,
26220380-26220514,26220617-26220714,26221697-26221866,
26222586-26222961
Length = 672
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 140 SKKEETFIVLAQRSGITCACSVGHSTRSTLACAGVPSPM 256
+KKE F+V A SG+ C + S LA A + P+
Sbjct: 626 NKKEAAFMVPAVASGLMCGDGIWTFPSSILALAKIKPPI 664
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 364 DKYKAVSVSQELATPRESKSKK 429
DKY VSV E TP + K KK
Sbjct: 373 DKYPLVSVPDETLTPEQLKEKK 394
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,553,009
Number of Sequences: 37544
Number of extensions: 293902
Number of successful extensions: 610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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