Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0982
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    37   0.003
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    28   1.2  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   6.6  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   8.7  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = -1

Query: 243 SSIQNLIRDDKLWFTRIMQQIHRHACLWSGIR--FYDIRFSNYR 118
           S + +   DD+L+   ++QQ  + + LWS I+  F+DI+++NYR
Sbjct: 257 SEVDSAEEDDELFQNYVLQQTRKESKLWSFIKKVFHDIKYANYR 300


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 80  CSLLESCNKLDTIVSGL 30
           CSLL  CN+LD + SGL
Sbjct: 146 CSLLYPCNRLDRLTSGL 162


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 318 IFMRSKLTRYVPPTCSYHESRGSD 389
           ++  S +T + P  C+Y  +RG+D
Sbjct: 279 VYFVSDITEFTPLACAYARARGAD 302


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +2

Query: 476 DEPSPLERSR*YRVRASRLYRLFANRNINRFKSLTSFGCSKCCVENYSTRLDLPLDMFFS 655
           D+PSPL     + + +  +Y   AN + + ++   +   ++  V+++     L  D  + 
Sbjct: 137 DQPSPLAEVSDFAISSPHVYPKSANSHDSHYEQFANNDVTESAVDDHPATRKLSRDELYL 196

Query: 656 GIS 664
            IS
Sbjct: 197 PIS 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,086
Number of Sequences: 5004
Number of extensions: 54635
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)